Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HPY16_RS11305 Genome accession   NZ_CP053802
Coordinates   2525576..2526109 (-) Length   177 a.a.
NCBI ID   WP_000168287.1    Uniprot ID   A0A2A1YRC3
Organism   Vibrio cholerae strain L6G     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2520576..2531109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY16_RS11285 (HPY16_11280) - 2521031..2521348 (-) 318 WP_000252811.1 MSHA biogenesis protein MshK -
  HPY16_RS11290 (HPY16_11285) gspM 2521341..2521991 (-) 651 WP_000835144.1 type II secretion system protein GspM -
  HPY16_RS11295 (HPY16_11290) - 2521988..2523427 (-) 1440 WP_000743256.1 PilN domain-containing protein -
  HPY16_RS11300 (HPY16_11295) csrD 2523440..2525452 (-) 2013 WP_175248267.1 RNase E specificity factor CsrD -
  HPY16_RS11305 (HPY16_11300) ssb 2525576..2526109 (-) 534 WP_000168287.1 single-stranded DNA-binding protein Machinery gene
  HPY16_RS11310 (HPY16_11305) qstR 2526401..2527045 (+) 645 WP_001188318.1 LuxR C-terminal-related transcriptional regulator Regulator
  HPY16_RS11315 (HPY16_11310) galU 2527218..2528090 (+) 873 WP_001920788.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  HPY16_RS11320 (HPY16_11315) uvrA 2528246..2531068 (+) 2823 WP_175248268.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19644.85 Da        Isoelectric Point: 5.7626

>NTDB_id=447527 HPY16_RS11305 WP_000168287.1 2525576..2526109(-) (ssb) [Vibrio cholerae strain L6G]
MASRGVNKVILIGNLGQDPEVRYMPSGGAVANITIATSETWRDKATGEQKEKTEWHRVTLYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGYNGIMQMLGGRAQQGGMPAQGGMNAPAQQGSWGQPQQPAKQHQPMQQSAPQQYS
QPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=447527 HPY16_RS11305 WP_000168287.1 2525576..2526109(-) (ssb) [Vibrio cholerae strain L6G]
ATGGCAAGCCGTGGCGTGAACAAAGTAATTTTGATTGGTAACTTAGGCCAAGATCCTGAAGTGCGTTATATGCCAAGCGG
CGGCGCAGTAGCGAATATCACCATCGCGACCTCCGAAACCTGGCGTGATAAAGCCACAGGTGAACAGAAGGAAAAAACCG
AATGGCATCGAGTTACTCTGTATGGAAAATTGGCAGAAGTGGCCGGTGAATATTTGCGCAAAGGTTCTCAAGTTTACATT
GAAGGCCAACTGCAAACGCGTAAGTGGCAAGATCAAAGTGGTCAAGATCGCTACTCAACCGAAGTGGTTGTACAAGGCTA
TAACGGCATCATGCAGATGCTGGGTGGACGTGCACAGCAAGGTGGAATGCCAGCCCAAGGCGGCATGAATGCTCCTGCGC
AGCAAGGAAGTTGGGGACAACCACAACAACCGGCGAAGCAGCATCAGCCTATGCAACAATCTGCGCCTCAACAGTACTCG
CAACCGCAGTATAATGAGCCGCCGATGGATTTTGATGACGACATCCCGTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A1YRC3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

99.435

100

0.994
  ssb Glaesserella parasuis strain SC1401

52.198

100

0.537
  ssb Neisseria meningitidis MC58

47.778

100

0.486
  ssb Neisseria gonorrhoeae MS11

47.778

100

0.486