Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   HPY14_RS02320 Genome accession   NZ_CP053798
Coordinates   481933..482808 (-) Length   291 a.a.
NCBI ID   WP_114720120.1    Uniprot ID   -
Organism   Vibrio cholerae strain SL5Y     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 476933..487808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY14_RS02300 (HPY14_02300) parC 477867..480152 (+) 2286 WP_000102516.1 DNA topoisomerase IV subunit A -
  HPY14_RS02305 (HPY14_02305) yacG 480201..480398 (-) 198 WP_000162865.1 DNA gyrase inhibitor YacG -
  HPY14_RS02310 (HPY14_02310) zapD 480556..481296 (-) 741 WP_000207193.1 cell division protein ZapD -
  HPY14_RS02315 (HPY14_02315) coaE 481328..481936 (-) 609 WP_033928827.1 dephospho-CoA kinase -
  HPY14_RS02320 (HPY14_02320) pilD 481933..482808 (-) 876 WP_114720120.1 A24 family peptidase Machinery gene
  HPY14_RS02325 (HPY14_02325) pilC 482866..484092 (-) 1227 WP_000648511.1 type II secretion system F family protein Machinery gene
  HPY14_RS02330 (HPY14_02330) pilB 484135..485823 (-) 1689 WP_175233820.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HPY14_RS02335 (HPY14_02335) - 485830..486234 (-) 405 WP_057551631.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  HPY14_RS02340 (HPY14_02340) nadC 486479..487369 (-) 891 WP_175233821.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 32433.69 Da        Isoelectric Point: 7.1618

>NTDB_id=447409 HPY14_RS02320 WP_114720120.1 481933..482808(-) (pilD) [Vibrio cholerae strain SL5Y]
MELFYFYPWLFPVLATLFGLIVGSFLNVVIYRLPKIMEREWRAECAASFPEYGITPPEGKLTLSLPRSTCPHCQTPIRVI
DNIPLLSWLALRGQCSHCKAPISARYPLIELLTALMSLVIATHFPFGVFGVALLFFSYVLIAATFIDFDTLLLPDQLTLP
LLWGGIALALLGFSPVSLSDAVIGAMAGYLSLWSIYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPIIVLLSSVVGV
VFGLIQLRQQKKGIDMAFPFGPYLAIAGWFALLWGDKVIDWYFTTWIGQPL

Nucleotide


Download         Length: 876 bp        

>NTDB_id=447409 HPY14_RS02320 WP_114720120.1 481933..482808(-) (pilD) [Vibrio cholerae strain SL5Y]
ATGGAACTGTTTTACTTCTACCCTTGGCTGTTTCCGGTGCTAGCCACGCTGTTTGGCTTGATTGTCGGTAGCTTTCTCAA
TGTGGTGATCTATCGCTTACCCAAAATCATGGAGCGTGAATGGCGTGCGGAATGTGCGGCGAGTTTTCCTGAATATGGCA
TCACGCCACCAGAGGGTAAACTGACCCTCAGTTTGCCGCGTTCCACTTGCCCACACTGCCAAACGCCGATTCGCGTGATT
GATAATATCCCGCTACTGAGTTGGCTGGCGCTGCGCGGTCAATGCTCACACTGTAAAGCGCCGATCAGCGCTCGTTATCC
CTTGATTGAGCTACTCACTGCCCTCATGAGCTTAGTGATTGCTACTCACTTTCCGTTCGGGGTGTTTGGCGTGGCGCTGC
TGTTTTTCAGCTATGTATTGATTGCGGCGACCTTCATCGACTTCGATACCCTGTTGCTGCCCGACCAATTAACGCTACCT
TTACTGTGGGGCGGTATTGCACTGGCACTGCTTGGTTTTTCTCCGGTTTCACTCAGTGATGCGGTGATCGGAGCCATGGC
GGGTTATCTCTCGCTGTGGTCGATTTACTGGCTATTTAAACTGCTGACAGGTAAAGAAGGCATGGGTTATGGCGATTTCA
AATTGCTCGCCGCTCTCGGCGCTTGGCTGGGTTGGCAGCAGTTACCTATCATCGTACTGCTCTCATCGGTGGTCGGGGTG
GTTTTCGGTTTAATCCAACTGCGCCAGCAGAAAAAAGGTATTGATATGGCCTTTCCGTTTGGCCCTTATCTCGCCATCGC
GGGGTGGTTTGCCTTGCTGTGGGGCGATAAGGTAATTGATTGGTACTTCACCACTTGGATAGGACAACCATTATGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-124)

Type IV leader peptidase family (Peptidase_A24)

(135-244)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

98.625

100

0.986
  pilD Vibrio campbellii strain DS40M4

75

98.969

0.742
  pilD Acinetobacter nosocomialis M2

53.309

93.471

0.498
  pilD Acinetobacter baumannii D1279779

52.941

93.471

0.495
  pilD Neisseria gonorrhoeae MS11

44.792

98.969

0.443