Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   HPY14_RS00900 Genome accession   NZ_CP053798
Coordinates   187841..188329 (-) Length   162 a.a.
NCBI ID   WP_175233806.1    Uniprot ID   -
Organism   Vibrio cholerae strain SL5Y     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 182841..193329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY14_RS00870 (HPY14_00870) gspL 183099..184310 (+) 1212 WP_057563694.1 type II secretion system protein GspL -
  HPY14_RS00875 (HPY14_00875) gspM 184320..184817 (+) 498 WP_057563693.1 type II secretion system protein M -
  HPY14_RS00880 (HPY14_00880) - 184819..185577 (+) 759 WP_057563692.1 type II secretion system protein N -
  HPY14_RS00885 (HPY14_00885) cysQ 185629..186456 (-) 828 WP_000106799.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  HPY14_RS00890 (HPY14_00890) nudE 186479..187027 (-) 549 WP_000095812.1 ADP compounds hydrolase NudE -
  HPY14_RS00895 (HPY14_00895) nfuA 187166..187753 (-) 588 WP_000070178.1 Fe-S biogenesis protein NfuA -
  HPY14_RS00900 (HPY14_00900) comF 187841..188329 (-) 489 WP_175233806.1 ComF family protein Machinery gene
  HPY14_RS00905 (HPY14_00905) - 188329..188460 (-) 132 WP_080391439.1 adenylylsulfate kinase -
  HPY14_RS00910 (HPY14_00910) bioH 188635..189396 (+) 762 WP_057563690.1 pimeloyl-ACP methyl ester esterase BioH -
  HPY14_RS00915 (HPY14_00915) - 189645..190115 (+) 471 WP_000961393.1 hypothetical protein -
  HPY14_RS00920 (HPY14_00920) - 190210..192531 (-) 2322 WP_057563689.1 Tex family protein -
  HPY14_RS00925 (HPY14_00925) greB 192776..193261 (+) 486 WP_094392812.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 18687.45 Da        Isoelectric Point: 8.9619

>NTDB_id=447400 HPY14_RS00900 WP_175233806.1 187841..188329(-) (comF) [Vibrio cholerae strain SL5Y]
MCVGDYRFPLSDAVHQLKYQRQFWQAPRLAKLLATKINEPAPLLCSVPLHWRRRWQRGFNQSDLLARELANVLNIEYDHQ
LFARRRATPHQQGLSKAQRIHNLRDAFVLNHPPNQPHVAIVDDVVTTGSTIRHLCDLLLDVGVQSIDIYCICRTPEPKDS
HG

Nucleotide


Download         Length: 489 bp        

>NTDB_id=447400 HPY14_RS00900 WP_175233806.1 187841..188329(-) (comF) [Vibrio cholerae strain SL5Y]
ATGTGTGTCGGCGATTACCGCTTCCCACTCAGTGATGCGGTGCATCAACTCAAATACCAACGCCAGTTTTGGCAAGCGCC
GCGCTTGGCTAAGCTACTCGCCACCAAGATTAACGAGCCCGCCCCTTTGCTGTGCAGCGTGCCACTGCATTGGCGGCGAC
GCTGGCAACGCGGCTTTAATCAAAGCGATCTGCTGGCGCGCGAGTTAGCCAATGTGCTGAACATTGAATATGACCACCAA
CTCTTTGCACGCCGCCGAGCCACACCGCATCAACAAGGACTCAGCAAGGCGCAGCGAATCCACAACCTACGCGATGCGTT
TGTGCTGAATCATCCGCCAAACCAACCACATGTTGCGATTGTGGACGATGTGGTGACCACAGGCAGTACGATCCGACATT
TATGCGATTTACTGCTTGATGTCGGTGTGCAAAGCATTGATATTTACTGCATATGCCGCACTCCCGAGCCGAAAGATAGC
CACGGTTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(65-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

98.148

100

0.981
  comF Vibrio campbellii strain DS40M4

52.903

95.679

0.506
  comFC Legionella pneumophila strain ERS1305867

40.26

95.062

0.383
  comFC Legionella pneumophila str. Paris

40.26

95.062

0.383
  comF Haemophilus influenzae 86-028NP

38.037

100

0.383
  comF Haemophilus influenzae Rd KW20

36.81

100

0.37