Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   HPY13_RS02320 Genome accession   NZ_CP053796
Coordinates   481926..482801 (-) Length   291 a.a.
NCBI ID   WP_033932898.1    Uniprot ID   -
Organism   Vibrio cholerae strain SL4G     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 476926..487801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY13_RS02300 (HPY13_02300) parC 477860..480145 (+) 2286 WP_046121363.1 DNA topoisomerase IV subunit A -
  HPY13_RS02305 (HPY13_02305) yacG 480194..480391 (-) 198 WP_000162865.1 DNA gyrase inhibitor YacG -
  HPY13_RS02310 (HPY13_02310) zapD 480549..481289 (-) 741 WP_000207193.1 cell division protein ZapD -
  HPY13_RS02315 (HPY13_02315) coaE 481321..481929 (-) 609 WP_069216898.1 dephospho-CoA kinase -
  HPY13_RS02320 (HPY13_02320) pilD 481926..482801 (-) 876 WP_033932898.1 A24 family peptidase Machinery gene
  HPY13_RS02325 (HPY13_02325) pilC 482859..484085 (-) 1227 WP_000648506.1 type II secretion system F family protein Machinery gene
  HPY13_RS02330 (HPY13_02330) pilB 484128..485816 (-) 1689 WP_108243691.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HPY13_RS02335 (HPY13_02335) pilA 485820..486248 (-) 429 WP_094393042.1 pilin Machinery gene
  HPY13_RS02340 (HPY13_02340) nadC 486493..487383 (-) 891 WP_094393041.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 32433.69 Da        Isoelectric Point: 7.1618

>NTDB_id=447361 HPY13_RS02320 WP_033932898.1 481926..482801(-) (pilD) [Vibrio cholerae strain SL4G]
MELFYFYPWLFPVLATLFGLIVGSFLNVVIYRLPKIMEREWRAECAASFPEYGITPPEGKLTLSLPRSTCPHCQTPIRVI
DNIPLLSWLALRGQCSHCKAPISARYPLIELLTALMSLVIATHFPFGVFGVALLFFSYVLIAATFIDFDTLLLPDQLTLP
LLWGGIALALLGFSPVSLSDAVIGAMAGYLSLWSIYWLFKLLTAKEGMGYGDFKLLAALGAWLGWQQLPVIVLLSSVVGV
IFGLIQLRQQKKGIDMAFPFGPYLAIAGWFALLWGDKVIDWYFTTWVGQPL

Nucleotide


Download         Length: 876 bp        

>NTDB_id=447361 HPY13_RS02320 WP_033932898.1 481926..482801(-) (pilD) [Vibrio cholerae strain SL4G]
ATGGAACTGTTTTACTTCTACCCTTGGCTGTTTCCGGTGCTCGCCACGCTGTTTGGCTTGATTGTCGGCAGCTTTCTCAA
TGTGGTGATCTATCGCTTACCCAAAATCATGGAGCGTGAATGGCGCGCGGAATGTGCGGCAAGTTTTCCTGAATATGGCA
TCACGCCACCAGAGGGTAAACTGACCCTCAGTTTGCCGCGTTCCACTTGCCCACACTGCCAAACGCCGATTCGCGTCATT
GATAATATTCCGCTACTGAGTTGGCTGGCGCTGCGCGGTCAATGCTCACACTGTAAAGCGCCGATCAGTGCTCGCTATCC
CTTGATTGAGCTACTCACTGCCCTCATGAGCTTAGTGATTGCCACTCACTTTCCGTTCGGAGTGTTTGGCGTGGCGCTGC
TGTTTTTCAGCTATGTATTGATTGCGGCGACCTTCATCGACTTCGATACCCTATTGCTGCCCGACCAATTAACGCTACCT
TTACTGTGGGGCGGTATTGCGCTGGCACTGCTTGGCTTTTCTCCGGTTTCACTCAGTGATGCGGTTATCGGAGCCATGGC
GGGTTATCTCTCGCTGTGGTCGATTTACTGGCTATTTAAACTGCTGACAGCTAAAGAAGGCATGGGTTATGGTGATTTCA
AATTGCTCGCCGCACTCGGCGCTTGGCTGGGTTGGCAGCAGTTGCCTGTCATCGTACTGCTCTCATCGGTGGTTGGGGTG
ATTTTCGGTTTAATCCAACTGCGCCAGCAGAAAAAAGGTATCGATATGGCCTTTCCGTTTGGCCCTTATCTCGCCATCGC
GGGATGGTTTGCCTTGCTGTGGGGCGATAAGGTAATTGATTGGTACTTCACCACTTGGGTAGGACAACCGTTATGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-124)

Type IV leader peptidase family (Peptidase_A24)

(135-244)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

99.313

100

0.993
  pilD Vibrio campbellii strain DS40M4

75

98.969

0.742
  pilD Acinetobacter nosocomialis M2

53.309

93.471

0.498
  pilD Acinetobacter baumannii D1279779

52.941

93.471

0.495
  pilD Neisseria gonorrhoeae MS11

44.444

98.969

0.44