Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   HPY13_RS00900 Genome accession   NZ_CP053796
Coordinates   187836..188324 (-) Length   162 a.a.
NCBI ID   WP_057563691.1    Uniprot ID   -
Organism   Vibrio cholerae strain SL4G     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 182836..193324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY13_RS00870 (HPY13_00870) gspL 183094..184305 (+) 1212 WP_057563694.1 type II secretion system protein GspL -
  HPY13_RS00875 (HPY13_00875) gspM 184315..184812 (+) 498 WP_057563693.1 type II secretion system protein M -
  HPY13_RS00880 (HPY13_00880) - 184814..185572 (+) 759 WP_057563692.1 type II secretion system protein N -
  HPY13_RS00885 (HPY13_00885) cysQ 185624..186451 (-) 828 WP_000106799.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  HPY13_RS00890 (HPY13_00890) nudE 186474..187022 (-) 549 WP_000095812.1 ADP compounds hydrolase NudE -
  HPY13_RS00895 (HPY13_00895) nfuA 187161..187748 (-) 588 WP_000070178.1 Fe-S biogenesis protein NfuA -
  HPY13_RS00900 (HPY13_00900) comF 187836..188324 (-) 489 WP_057563691.1 ComF family protein Machinery gene
  HPY13_RS00905 (HPY13_00905) - 188324..188455 (-) 132 WP_080391439.1 adenylylsulfate kinase -
  HPY13_RS00910 (HPY13_00910) bioH 188630..189391 (+) 762 WP_057563690.1 pimeloyl-ACP methyl ester esterase BioH -
  HPY13_RS00915 (HPY13_00915) - 189640..190110 (+) 471 WP_000961393.1 hypothetical protein -
  HPY13_RS00920 (HPY13_00920) - 190205..192526 (-) 2322 WP_057563689.1 Tex family protein -
  HPY13_RS00925 (HPY13_00925) greB 192771..193256 (+) 486 WP_094392812.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 18644.43 Da        Isoelectric Point: 8.6581

>NTDB_id=447352 HPY13_RS00900 WP_057563691.1 187836..188324(-) (comF) [Vibrio cholerae strain SL4G]
MCVGDYRFPLSDAVHQLKYQRQFWQAPRLAKLLATKINEPAPLLCSVPLHWQRRWLRGFNQSDLLARELANVLNIEYDHQ
LFARRRATPHQQGLSKAQRIHNLRDAFVLNHPPNQPHVAIVDDVVTTGSTIRHLCDLLLDVGVQSIDIYCICRTPEPKDS
HG

Nucleotide


Download         Length: 489 bp        

>NTDB_id=447352 HPY13_RS00900 WP_057563691.1 187836..188324(-) (comF) [Vibrio cholerae strain SL4G]
ATGTGTGTCGGCGATTACCGCTTCCCACTCAGTGATGCGGTGCATCAACTCAAATACCAACGCCAGTTTTGGCAAGCGCC
GCGCTTGGCTAAGCTACTCGCCACCAAGATTAACGAGCCAGCCCCGTTGCTGTGCAGTGTACCGCTACATTGGCAGCGAC
GTTGGCTACGCGGCTTTAATCAAAGCGATCTGCTGGCACGTGAATTAGCCAATGTGCTGAACATTGAATATGATCACCAA
CTCTTTGCACGCCGCCGAGCCACACCGCATCAACAAGGACTCAGCAAGGCGCAGCGAATCCACAACCTACGCGATGCGTT
TGTGCTGAATCATCCGCCAAACCAACCACATGTTGCGATTGTCGACGATGTGGTGACCACAGGCAGTACGATCCGACATT
TATGCGATTTACTGCTTGATGTCGGTGTGCAAAGCATTGATATTTACTGCATATGCCGCACTCCGGAGCCGAAAGATAGT
CACGGTTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(65-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

96.914

100

0.969
  comF Vibrio campbellii strain DS40M4

53.548

95.679

0.512
  comFC Legionella pneumophila strain ERS1305867

40.26

95.062

0.383
  comFC Legionella pneumophila str. Paris

40.26

95.062

0.383
  comF Haemophilus influenzae 86-028NP

38.037

100

0.383
  comF Haemophilus influenzae Rd KW20

36.81

100

0.37