Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GE021_RS09010 Genome accession   NZ_CP053792
Coordinates   1836866..1837357 (-) Length   163 a.a.
NCBI ID   WP_003045179.1    Uniprot ID   -
Organism   Streptococcus canis strain HL_77_1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1831866..1842357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE021_RS08995 (GE021_008985) - 1834322..1835266 (+) 945 WP_003045175.1 magnesium transporter CorA family protein -
  GE021_RS09000 (GE021_008990) - 1835378..1836037 (+) 660 WP_164406431.1 DUF1129 domain-containing protein -
  GE021_RS09005 (GE021_008995) rpsR 1836508..1836747 (-) 240 WP_002983142.1 30S ribosomal protein S18 -
  GE021_RS09010 (GE021_009000) ssb 1836866..1837357 (-) 492 WP_003045179.1 single-stranded DNA-binding protein Machinery gene
  GE021_RS09015 (GE021_009005) rpsF 1837379..1837669 (-) 291 WP_164406428.1 30S ribosomal protein S6 -
  GE021_RS11575 - 1838708..1839001 (-) 294 WP_093998844.1 hypothetical protein -
  GE021_RS09020 (GE021_009010) mutY 1839173..1840336 (+) 1164 WP_164406426.1 A/G-specific adenine glycosylase -
  GE021_RS09025 (GE021_009015) trxA 1840434..1840748 (-) 315 WP_003045187.1 thioredoxin -
  GE021_RS09030 (GE021_009020) - 1840975..1842294 (+) 1320 WP_003045190.1 FAD-containing oxidoreductase -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17961.77 Da        Isoelectric Point: 4.8894

>NTDB_id=447291 GE021_RS09010 WP_003045179.1 1836866..1837357(-) (ssb) [Streptococcus canis strain HL_77_1]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRNFKSQNGEREADFISCVIWRQPAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNAPSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=447291 GE021_RS09010 WP_003045179.1 1836866..1837357(-) (ssb) [Streptococcus canis strain HL_77_1]
ATGATTAACAATGTAGTACTAGTTGGTCGCATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTGGC
TACCTTCACACTTGCTGTTAACCGTAACTTTAAAAGCCAAAATGGTGAGCGCGAGGCAGATTTCATTAGCTGTGTTATCT
GGCGTCAGCCAGCTGAAAACTTAGCAAACTGGGCTAAAAAAGGTGCCTTAATCGGAATTACAGGTCGTATTCAGACCCGT
AATTACGAAAACCAACAAGGGCAACGTGTCTATGTGACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGCCGTGC
TACACGTGAAGGTGGCTCAACTGGATCATTTAATGGTGGTTTTAACAACAATGCCCCATCATCAAACAGTTACTCAGCAC
CTGCACAACAAACACCTAACTTTGGAAGAGATGACAGTCCATTTGGTAATTCAAACCCGATGGATATTTCAGATGACGAT
CTTCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.14

100

0.614
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.471

100

0.613
  ssbB Bacillus subtilis subsp. subtilis str. 168

55.66

65.031

0.362
  ssb Vibrio cholerae strain A1552

33.333

100

0.362