Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   GE022_RS08685 Genome accession   NZ_CP053790
Coordinates   1784194..1784685 (-) Length   163 a.a.
NCBI ID   WP_164405118.1    Uniprot ID   -
Organism   Streptococcus canis strain HL_77_2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1779194..1789685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE022_RS08670 (GE022_008660) - 1781631..1782575 (+) 945 WP_003045175.1 magnesium transporter CorA family protein -
  GE022_RS08675 (GE022_008665) - 1782707..1783366 (+) 660 WP_164405117.1 DUF1129 domain-containing protein -
  GE022_RS08680 (GE022_008670) rpsR 1783836..1784075 (-) 240 WP_002983142.1 30S ribosomal protein S18 -
  GE022_RS08685 (GE022_008675) ssbA 1784194..1784685 (-) 492 WP_164405118.1 single-stranded DNA-binding protein Machinery gene
  GE022_RS08690 (GE022_008680) rpsF 1784707..1784997 (-) 291 WP_003045181.1 30S ribosomal protein S6 -
  GE022_RS10760 - 1786037..1786330 (-) 294 WP_093998844.1 hypothetical protein -
  GE022_RS08695 (GE022_008685) mutY 1786501..1787664 (+) 1164 WP_164405119.1 A/G-specific adenine glycosylase -
  GE022_RS08700 (GE022_008690) trxA 1787762..1788076 (-) 315 WP_003045187.1 thioredoxin -
  GE022_RS08705 (GE022_008695) - 1788303..1789622 (+) 1320 WP_164227935.1 FAD-containing oxidoreductase -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17934.74 Da        Isoelectric Point: 4.8894

>NTDB_id=447234 GE022_RS08685 WP_164405118.1 1784194..1784685(-) (ssbA) [Streptococcus canis strain HL_77_2]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRNFKSQNGEREADFISCVIWRQPAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFSGGFNNNAPSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=447234 GE022_RS08685 WP_164405118.1 1784194..1784685(-) (ssbA) [Streptococcus canis strain HL_77_2]
ATGATTAACAATGTAGTACTAGTTGGTCGCATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTGGC
TACCTTCACACTTGCTGTTAACCGTAACTTTAAAAGCCAAAATGGTGAGCGCGAGGCAGATTTCATTAGCTGTGTTATCT
GGCGTCAGCCAGCTGAAAACTTAGCAAACTGGGCTAAAAAAGGTGCCTTAATCGGAATTACAGGTCGTATTCAGACCCGT
AATTACGAAAACCAACAAGGGCAACGTGTCTATGTGACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGCCGTGC
TACACGTGAAGGTGGCTCAACTGGATCATTTAGTGGTGGTTTTAACAACAATGCCCCATCATCAAACAGTTACTCAGCAC
CTGCACAACAAACACCTAACTTTGGAAGAGATGACAGTCCATTTGGTAATTCAAACCCGATGGATATTTCAGATGACGAT
CTTCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.471

100

0.613
  ssb Latilactobacillus sakei subsp. sakei 23K

57.895

100

0.607
  ssbB Bacillus subtilis subsp. subtilis str. 168

55.66

65.031

0.362
  ssb Vibrio cholerae strain A1552

33.333

100

0.362