Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GE023_RS08975 Genome accession   NZ_CP053789
Coordinates   1817424..1817915 (-) Length   163 a.a.
NCBI ID   WP_164406231.1    Uniprot ID   -
Organism   Streptococcus canis strain HL_98_2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1812424..1822915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE023_RS08960 (GE023_008955) - 1814881..1815825 (+) 945 WP_003045175.1 magnesium transporter CorA family protein -
  GE023_RS08965 (GE023_008960) - 1815937..1816596 (+) 660 WP_164401561.1 DUF1129 domain-containing protein -
  GE023_RS08970 (GE023_008965) rpsR 1817067..1817306 (-) 240 WP_002983142.1 30S ribosomal protein S18 -
  GE023_RS08975 (GE023_008970) ssb 1817424..1817915 (-) 492 WP_164406231.1 single-stranded DNA-binding protein Machinery gene
  GE023_RS08980 (GE023_008975) rpsF 1817937..1818227 (-) 291 WP_003045181.1 30S ribosomal protein S6 -
  GE023_RS11195 - 1819266..1819559 (-) 294 WP_003045183.1 hypothetical protein -
  GE023_RS08985 (GE023_008980) mutY 1819729..1820892 (+) 1164 WP_003045185.1 A/G-specific adenine glycosylase -
  GE023_RS08990 (GE023_008985) trxA 1820990..1821304 (-) 315 WP_003045187.1 thioredoxin -
  GE023_RS08995 (GE023_008990) - 1821531..1822850 (+) 1320 WP_003045190.1 FAD-containing oxidoreductase -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18019.81 Da        Isoelectric Point: 4.7079

>NTDB_id=447180 GE023_RS08975 WP_164406231.1 1817424..1817915(-) (ssb) [Streptococcus canis strain HL_98_2]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRNFKSQNGEREADFISCVIWRQPAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNAPSSNSYSAPAQQTPNFGRDDSPFDNSNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=447180 GE023_RS08975 WP_164406231.1 1817424..1817915(-) (ssb) [Streptococcus canis strain HL_98_2]
ATGATTAACAATGTAGTACTAGTTGGTCGCATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTGGC
TACCTTCACACTTGCTGTTAACCGTAACTTTAAAAGCCAAAATGGTGAGCGCGAGGCAGATTTCATTAGCTGTGTTATCT
GGCGTCAGCCAGCTGAAAACTTAGCAAACTGGGCTAAAAAAGGTGCCTTAATCGGAATTACAGGTCGTATTCAGACCCGT
AATTACGAAAACCAACAAGGGCAACGTGTCTATGTGACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGCCGTGC
TACACGTGAAGGTGGCTCAACTGGATCATTTAATGGTGGTTTTAACAACAATGCCCCATCATCAAACAGTTACTCAGCAC
CTGCACAACAAACACCTAACTTTGGAAGAGATGACAGTCCATTTGATAATTCAAACCCGATGGATATTTCAGATGACGAT
CTTCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.721

100

0.62
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.471

100

0.613
  ssbB Bacillus subtilis subsp. subtilis str. 168

55.66

65.031

0.362
  ssb Vibrio cholerae strain A1552

33.333

100

0.362