Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HQN81_RS00910 Genome accession   NZ_CP053787
Coordinates   194404..194940 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli isolate J31     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 189404..199940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQN81_RS00890 (HQN81_00890) aphA 189693..190406 (+) 714 WP_001395166.1 acid phosphatase AphA -
  HQN81_RS00895 (HQN81_00895) yjbQ 190517..190933 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HQN81_RS00900 (HQN81_00900) yjbR 190937..191293 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  HQN81_RS00905 (HQN81_00905) uvrA 191328..194150 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  HQN81_RS00910 (HQN81_00910) ssb 194404..194940 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HQN81_RS00915 (HQN81_00915) yjcB 195039..195320 (-) 282 WP_172614049.1 YjcB family protein -
  HQN81_RS00920 (HQN81_00920) pdeC 195750..197336 (+) 1587 Protein_173 c-di-GMP phosphodiesterase PdeC -
  HQN81_RS00925 (HQN81_00925) soxS 197339..197662 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  HQN81_RS00930 (HQN81_00930) soxR 197748..198212 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=447114 HQN81_RS00910 WP_000168305.1 194404..194940(+) (ssb) [Escherichia coli isolate J31]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=447114 HQN81_RS00910 WP_000168305.1 194404..194940(+) (ssb) [Escherichia coli isolate J31]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489