Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   F8538_RS15305 Genome accession   NZ_CP053781
Coordinates   3304317..3304865 (-) Length   182 a.a.
NCBI ID   WP_015872740.1    Uniprot ID   -
Organism   Edwardsiella ictaluri strain 2234     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3299317..3309865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F8538_RS15290 (F8538_15290) ygeW 3300311..3301498 (-) 1188 WP_015872737.1 knotted carbamoyltransferase YgeW -
  F8538_RS15295 (F8538_15295) - 3302044..3303828 (+) 1785 WP_015872738.1 sigma-54 interaction domain-containing protein -
  F8538_RS15300 (F8538_15300) - 3303858..3304187 (-) 330 WP_081166760.1 1,4-dihydroxy-2-naphthoate prenyltransferase -
  F8538_RS15305 (F8538_15305) ssb 3304317..3304865 (-) 549 WP_015872740.1 single-stranded DNA-binding protein Machinery gene
  F8538_RS15310 (F8538_15310) uvrA 3305093..3307924 (+) 2832 WP_081166763.1 excinuclease ABC subunit UvrA -
  F8538_RS15315 (F8538_15315) - 3308010..3308354 (-) 345 WP_081166766.1 MmcQ/YjbR family DNA-binding protein -
  F8538_RS15320 (F8538_15320) - 3308347..3308773 (-) 427 Protein_2998 secondary thiamine-phosphate synthase enzyme YjbQ -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 19681.71 Da        Isoelectric Point: 5.2440

>NTDB_id=447086 F8538_RS15305 WP_015872740.1 3304317..3304865(-) (ssb) [Edwardsiella ictaluri strain 2234]
MASRGVNKVILIGNLGQDPEVRYMPNGGAVANLTLATSDSWRDKQTGEQKERTEWHRVALYGKLAEIAGEYLRKGSQVYI
EGQLRTRKWQDQSGQDRYTTEVVVDISGSMQMLGGRQGGAPMGNQGQQGGWGQPQQPQGAAFSGGQAAPRQQSQQGGYSA
PAQPAAPQSSEPPMDFDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=447086 F8538_RS15305 WP_015872740.1 3304317..3304865(-) (ssb) [Edwardsiella ictaluri strain 2234]
ATGGCCAGCAGAGGCGTAAATAAAGTGATTCTTATCGGGAATCTGGGTCAGGACCCGGAGGTCCGCTATATGCCGAACGG
CGGCGCCGTTGCCAATTTGACGCTGGCAACCTCTGACAGCTGGCGTGACAAGCAGACCGGTGAGCAGAAAGAGCGCACCG
AATGGCACCGTGTTGCGCTGTACGGCAAGCTGGCGGAAATCGCCGGTGAGTACCTGCGTAAAGGCTCCCAAGTGTACATC
GAAGGTCAGCTGCGTACCCGTAAGTGGCAGGATCAGAGCGGCCAGGATCGCTATACCACGGAAGTGGTGGTCGATATCAG
CGGTTCCATGCAGATGCTGGGCGGCCGCCAAGGCGGCGCGCCGATGGGCAACCAGGGGCAGCAGGGTGGCTGGGGTCAGC
CGCAGCAGCCGCAGGGCGCCGCATTCAGCGGCGGCCAGGCGGCACCGCGTCAGCAGTCACAGCAGGGCGGCTATTCCGCG
CCGGCTCAGCCGGCAGCGCCGCAGAGCAGCGAACCGCCGATGGACTTTGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.016

100

0.758
  ssb Glaesserella parasuis strain SC1401

54.404

100

0.577
  ssb Neisseria meningitidis MC58

47.09

100

0.489
  ssb Neisseria gonorrhoeae MS11

47.09

100

0.489