Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   I5V48_RS09250 Genome accession   NZ_CP065430
Coordinates   1964207..1964872 (-) Length   221 a.a.
NCBI ID   WP_043025121.1    Uniprot ID   -
Organism   Streptococcus suis strain YZDH1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1959207..1969872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5V48_RS09245 (I5V48_09245) hpf 1963587..1964129 (-) 543 WP_014637536.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  I5V48_RS09250 (I5V48_09250) comFC/cflB 1964207..1964872 (-) 666 WP_043025121.1 ComF family protein Machinery gene
  I5V48_RS09255 (I5V48_09255) comFA/cflA 1964865..1966157 (-) 1293 WP_029185778.1 DEAD/DEAH box helicase Machinery gene
  I5V48_RS09260 (I5V48_09260) - 1966214..1966846 (+) 633 WP_043025119.1 YigZ family protein -
  I5V48_RS09265 (I5V48_09265) cysK 1966936..1967862 (+) 927 WP_043025117.1 cysteine synthase A -
  I5V48_RS09270 (I5V48_09270) - 1967889..1968260 (-) 372 WP_002937017.1 S1 RNA-binding domain-containing protein -
  I5V48_RS09275 (I5V48_09275) - 1968262..1969662 (-) 1401 WP_024377222.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25815.73 Da        Isoelectric Point: 8.6258

>NTDB_id=447032 I5V48_RS09250 WP_043025121.1 1964207..1964872(-) (comFC/cflB) [Streptococcus suis strain YZDH1]
MSNCLLCAQAMKNKTRFSDLIFFSKEKSGICEECFSTFEEIAEQHCPHCYKNGELESCKDCQYWQNQGKPVVHTALYRYN
QAMAHYFSRYKFQGDYVLRNIFAKKLRIALSQFPDYTIVPIPISQKRLSERGFNQVEGLLNATNIPYQSLLGKYESQKQS
SKNRAERLEAKQMFYLLDEKEVPEKILLFDDIYTTGATIQLAVELFMKIGRKEIKTFSLTR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=447032 I5V48_RS09250 WP_043025121.1 1964207..1964872(-) (comFC/cflB) [Streptococcus suis strain YZDH1]
ATGTCTAATTGTCTATTGTGCGCTCAAGCTATGAAAAATAAAACAAGATTTTCAGATCTCATCTTCTTTAGTAAAGAAAA
ATCGGGCATCTGTGAAGAATGTTTTTCAACTTTTGAGGAAATAGCAGAGCAACACTGTCCACATTGTTATAAAAATGGAG
AATTGGAAAGTTGCAAGGATTGTCAGTACTGGCAGAATCAAGGGAAACCAGTTGTTCATACAGCTTTGTACCGATATAAT
CAAGCGATGGCACATTATTTTAGTCGCTACAAATTTCAAGGAGACTATGTTTTAAGAAATATTTTTGCTAAAAAGCTTAG
AATAGCGTTAAGCCAATTTCCTGACTACACAATTGTTCCCATACCAATTAGTCAAAAACGACTATCAGAACGCGGTTTTA
ATCAAGTGGAAGGACTTTTGAATGCTACAAATATTCCCTATCAGTCCCTTCTTGGAAAGTATGAAAGCCAAAAACAATCA
TCTAAAAATCGTGCAGAGAGACTAGAAGCAAAACAGATGTTCTATCTATTAGATGAAAAAGAAGTGCCAGAAAAAATATT
ATTATTCGACGATATATATACAACAGGAGCCACAATCCAACTTGCTGTAGAACTTTTCATGAAAATTGGTAGGAAAGAAA
TCAAAACATTTTCACTAACACGATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

48.165

98.643

0.475
  comFC/cflB Streptococcus pneumoniae TIGR4

48.165

98.643

0.475
  comFC/cflB Streptococcus pneumoniae Rx1

48.165

98.643

0.475
  comFC/cflB Streptococcus pneumoniae D39

48.165

98.643

0.475
  comFC/cflB Streptococcus pneumoniae R6

48.165

98.643

0.475
  comFC/cflB Streptococcus mitis NCTC 12261

48.165

98.643

0.475