Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   HPQ66_RS16400 Genome accession   NZ_CP053764
Coordinates   3379197..3380582 (-) Length   461 a.a.
NCBI ID   WP_172615016.1    Uniprot ID   -
Organism   Bacillus velezensis strain B268     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3374197..3385582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPQ66_RS16365 (HPQ66_16420) flgL 3374372..3375289 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  HPQ66_RS16370 (HPQ66_16425) flgK 3375301..3376818 (-) 1518 WP_015387629.1 flagellar hook-associated protein FlgK -
  HPQ66_RS16375 (HPQ66_16430) - 3376834..3377316 (-) 483 WP_003151394.1 flagellar protein FlgN -
  HPQ66_RS16380 (HPQ66_16435) flgM 3377331..3377597 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  HPQ66_RS16385 (HPQ66_16440) - 3377667..3378086 (-) 420 WP_043867469.1 TIGR03826 family flagellar region protein -
  HPQ66_RS16390 (HPQ66_16445) comFC 3378160..3378849 (-) 690 WP_202980098.1 phosphoribosyltransferase family protein Machinery gene
  HPQ66_RS16395 (HPQ66_16450) - 3378855..3379139 (-) 285 WP_017418816.1 competence protein ComFB -
  HPQ66_RS16400 (HPQ66_16455) comFA 3379197..3380582 (-) 1386 WP_172615016.1 DEAD/DEAH box helicase Machinery gene
  HPQ66_RS16405 (HPQ66_16460) - 3380690..3381538 (-) 849 WP_003151387.1 DegV family protein -
  HPQ66_RS16410 (HPQ66_16465) degU 3381636..3382325 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  HPQ66_RS16415 (HPQ66_16470) degS 3382402..3383565 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  HPQ66_RS16420 (HPQ66_16475) - 3383788..3384435 (+) 648 WP_060657503.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52553.94 Da        Isoelectric Point: 10.0531

>NTDB_id=447014 HPQ66_RS16400 WP_172615016.1 3379197..3380582(-) (comFA) [Bacillus velezensis strain B268]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDQRINRFIEKEYITAEPSIIRRKNRYVCQRCGQSDQACFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYSWNQAPENSWEPVKLSWEGTLTDGQKQAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVDVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKVRKKNSALVYVTATPSDTLKKNAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGLLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGMTNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=447014 HPQ66_RS16400 WP_172615016.1 3379197..3380582(-) (comFA) [Bacillus velezensis strain B268]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCAGCGCATCAATCGTTTTATAGAAAAAGAGTATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCCCTGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGATGGACAGAAGCAGGCCGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCTGGTATCGAGTTT
GCCCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGACGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGCTTGACTCCGCTGATGATTTCAA
CCGCTCATCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGGTTCGCTGTTGATAAAGTGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAATGCTGAAGCCGGTTTGCTGAAAAGCGTTCGCATACCGGCCAGATATCATCGGAAACCTCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCTGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGAGTTACCGTACCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATGACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(328-421)

Type III restriction enzyme, res subunit (ResIII)

(118-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.609

99.783

0.625