Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   HPQ66_RS11510 Genome accession   NZ_CP053764
Coordinates   2440899..2441336 (-) Length   145 a.a.
NCBI ID   WP_025852922.1    Uniprot ID   -
Organism   Bacillus velezensis strain B268     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2435899..2446336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPQ66_RS11460 (HPQ66_11500) sinI 2436284..2436457 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  HPQ66_RS11465 (HPQ66_11505) sinR 2436491..2436826 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  HPQ66_RS11470 (HPQ66_11510) tasA 2436874..2437659 (-) 786 WP_007408329.1 biofilm matrix protein TasA -
  HPQ66_RS11475 (HPQ66_11515) sipW 2437723..2438307 (-) 585 WP_012117977.1 signal peptidase I SipW -
  HPQ66_RS11480 (HPQ66_11520) tapA 2438279..2438950 (-) 672 WP_070082109.1 amyloid fiber anchoring/assembly protein TapA -
  HPQ66_RS11485 (HPQ66_11525) - 2439209..2439538 (+) 330 WP_003153097.1 DUF3889 domain-containing protein -
  HPQ66_RS11490 (HPQ66_11530) - 2439578..2439757 (-) 180 WP_003153093.1 YqzE family protein -
  HPQ66_RS11495 (HPQ66_11535) comGG 2439814..2440191 (-) 378 WP_094247734.1 competence type IV pilus minor pilin ComGG Machinery gene
  HPQ66_RS11500 (HPQ66_11540) - 2440192..2440587 (-) 396 WP_172614825.1 ComGF family competence protein -
  HPQ66_RS11505 (HPQ66_11545) comGE 2440601..2440915 (-) 315 WP_146284356.1 competence type IV pilus minor pilin ComGE Machinery gene
  HPQ66_RS11510 (HPQ66_11550) comGD 2440899..2441336 (-) 438 WP_025852922.1 competence type IV pilus minor pilin ComGD Machinery gene
  HPQ66_RS11515 (HPQ66_11555) comGC 2441326..2441634 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene
  HPQ66_RS11520 (HPQ66_11560) comGB 2441639..2442676 (-) 1038 WP_063174751.1 competence type IV pilus assembly protein ComGB Machinery gene
  HPQ66_RS11525 (HPQ66_11565) comGA 2442663..2443733 (-) 1071 WP_070082113.1 competence type IV pilus ATPase ComGA Machinery gene
  HPQ66_RS11530 (HPQ66_11570) - 2443925..2444875 (-) 951 WP_071391609.1 magnesium transporter CorA family protein -
  HPQ66_RS11535 (HPQ66_11575) - 2445021..2446322 (+) 1302 WP_172614826.1 hemolysin family protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16268.78 Da        Isoelectric Point: 10.1850

>NTDB_id=446992 HPQ66_RS11510 WP_025852922.1 2440899..2441336(-) (comGD) [Bacillus velezensis strain B268]
MNNNRRTENGFTLLESLIVLSLASVLLTVLFTTVPPVCTHLAVRQKTEQLQKDIQLAQETAIAEHKRTKITFLPKEHKYK
LQSAGRIVERSFDSLHITLVTLPESLEFNEKGHPNSGGKIQLKSAGFTYEITVYLGSGNVHAKRK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=446992 HPQ66_RS11510 WP_025852922.1 2440899..2441336(-) (comGD) [Bacillus velezensis strain B268]
TTGAACAATAACAGGCGGACAGAAAACGGGTTTACCCTTCTTGAAAGCCTGATTGTGTTAAGCCTGGCGTCCGTCCTGCT
GACGGTTTTGTTCACGACGGTTCCGCCGGTCTGCACCCACCTTGCCGTGCGGCAAAAAACAGAACAGCTTCAAAAAGATA
TTCAGCTTGCGCAGGAAACGGCTATCGCAGAACATAAAAGAACAAAAATCACTTTTCTTCCAAAAGAGCATAAATACAAA
CTGCAGTCAGCCGGAAGGATTGTCGAGCGTTCTTTTGATTCGCTTCACATTACACTTGTGACTTTACCGGAGAGCCTTGA
ATTTAACGAAAAAGGCCATCCGAATTCGGGAGGAAAGATTCAATTGAAGAGCGCCGGGTTCACCTATGAGATCACAGTTT
ACTTAGGGAGCGGAAATGTCCATGCTAAACGGAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

54.795

100

0.552