Detailed information NTG0446961

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: I5V48_RS00340
• Genome accession: NZ_CP065430
• Coordinates: 63914..64915 (+)
• Length: 333 a.a.
• NCBI ID: WP_197315071.1
• Uniprot ID: -
• Organism: Streptococcus suis strain YZDH1
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 58914..69915

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I5V48_RS00325 (I5V48_00325)	-	59637..60410 (+)	774	WP_029179963.1	membrane protein	-
I5V48_RS00330 (I5V48_00330)	-	60413..62125 (+)	1713	WP_043025654.1	ABC transporter ATP-binding protein	-
I5V48_RS00335 (I5V48_00335)	-	62452..63720 (+)	1269	WP_197315070.1	MerR family transcriptional regulator	-
I5V48_RS00340 (I5V48_00340)	ruvB	63914..64915 (+)	1002	WP_197315071.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
I5V48_RS00345 (I5V48_00345)	-	64915..65124 (+)	210	WP_043025657.1	GNAT family N-acetyltransferase	-
I5V48_RS00350 (I5V48_00350)	-	65181..65804 (+)	624	WP_197315072.1	HAD-IA family hydrolase	-
I5V48_RS00355 (I5V48_00355)	comR	65875..66777 (+)	903	WP_043025662.1	helix-turn-helix domain-containing protein	Regulator
I5V48_RS00360 (I5V48_00360)	-	66986..68206 (+)	1221	WP_043025663.1	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	-

Sequence

Protein

• Length: 333 a.a.
• Molecular weight: 37670.13 Da
• Isoelectric Point: 4.4673

>NTDB_id=446961 I5V48_RS00340 WP_197315071.1 63914..64915(+) (ruvB) [Streptococcus suis strain YZDH1]
MTNRILDMEQMQDEEYVERTLRPQKLNEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANELGVN
IKQTSGPVIEKAGDLVALLNDLEPGDVLFIDEIHRMPMAVEEILYSAMEDFYIDIMIGAGEASRSVHLELPPFTLIGATT
RAGMLSNPLRARFGITGHMEYYEQADLTEIVERTADIFDMEITHEAAIELARRSRGTPRIANRLLKRVRDFAQIMGDGLI
DDTITDRALTMLDVDREGLDYVDQKILRTMIEMYGGGPVGLNTLSVNIAEERETVEDMYEPYLIQQGFLMRTRTGRVATA
KAYEHLGYPYTEK

Nucleotide

• Length: 1002 bp

>NTDB_id=446961 I5V48_RS00340 WP_197315071.1 63914..64915(+) (ruvB) [Streptococcus suis strain YZDH1]
ATGACAAATCGAATTTTAGATATGGAACAAATGCAGGACGAGGAGTATGTTGAGCGTACCCTGCGTCCGCAGAAATTAAA
TGAATACATCGGTCAGGACAAGGTTAAGGACCAGCTGAAAATCTTTATCGAAGCAGCCAAGCTCCGTGATGAAGCCTTGG
ATCATACGCTTCTTTTTGGCCCTCCAGGTTTGGGAAAGACCACCATGGCCTTTGTTATTGCCAACGAATTGGGGGTCAAC
ATTAAGCAGACCAGTGGTCCTGTTATTGAAAAAGCAGGTGACTTGGTGGCCCTTCTCAACGACTTGGAGCCTGGCGACGT
CCTCTTTATCGATGAAATCCACCGTATGCCCATGGCGGTCGAGGAAATTCTCTACTCTGCTATGGAGGATTTCTACATCG
ACATTATGATTGGAGCAGGGGAGGCTAGTCGCTCCGTGCATTTGGAGTTGCCGCCTTTTACCCTGATTGGAGCGACCACT
CGTGCGGGTATGCTGTCCAATCCTCTGAGGGCCCGTTTTGGTATTACCGGTCATATGGAGTATTATGAACAGGCTGATTT
GACGGAGATTGTCGAGCGGACGGCGGATATCTTTGATATGGAGATTACTCATGAAGCCGCTATCGAGCTGGCTCGTCGGT
CTCGTGGAACTCCCCGTATCGCCAACCGTCTGCTCAAGCGGGTGCGGGATTTTGCACAGATTATGGGCGACGGTCTGATT
GATGACACCATTACGGACAGGGCCTTGACTATGCTGGATGTGGACCGCGAGGGGCTGGACTATGTGGACCAGAAGATTCT
CCGTACCATGATTGAGATGTATGGCGGTGGTCCTGTCGGCCTCAACACTCTGTCGGTCAATATTGCCGAGGAGCGTGAGA
CGGTGGAGGACATGTACGAGCCTTACCTGATTCAGCAGGGCTTCCTCATGCGGACACGGACGGGGCGGGTTGCTACAGCC
AAGGCCTATGAGCACCTGGGCTATCCCTATACGGAAAAATAA

Domains

Predicted by InterProScan.

• RuvB C-terminal winged helix domain (WHD_RuvB) (257-326)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (21-179)

• RuvB AAA lid domain (AAA_lid_4) (182-255)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae TIGR4	90.03	99.399	0.895
ruvB	Streptococcus pneumoniae R6	89.728	99.399	0.892
ruvB	Streptococcus pneumoniae D39	89.728	99.399	0.892
ruvB	Bacillus subtilis subsp. subtilis str. 168	58.896	97.898	0.577
ruvB	Helicobacter pylori 26695	51.064	98.799	0.505
ruvB	Synechocystis sp. PCC 6803	50.479	93.994	0.474