Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | MARHY_RS02940 | Genome accession | NC_017067 |
| Coordinates | 636319..636843 (+) | Length | 174 a.a. |
| NCBI ID | WP_014420498.1 | Uniprot ID | - |
| Organism | Marinobacter nauticus ATCC 49840 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 631319..641843
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MARHY_RS02925 (MARHY0610) | rplQ | 631433..631831 (+) | 399 | WP_041654547.1 | 50S ribosomal protein L17 | - |
| MARHY_RS02930 (MARHY0611) | uvrA | 631904..634726 (-) | 2823 | WP_014420496.1 | excinuclease ABC subunit UvrA | - |
| MARHY_RS02935 (MARHY0612) | - | 634891..636261 (+) | 1371 | WP_014420497.1 | MFS transporter | - |
| MARHY_RS02940 (MARHY0613) | ssb | 636319..636843 (+) | 525 | WP_014420498.1 | single-stranded DNA-binding protein | Machinery gene |
| MARHY_RS02945 (MARHY0615) | - | 637053..637979 (+) | 927 | WP_158011866.1 | biogenesis protein MshI | - |
| MARHY_RS02950 (MARHY0616) | - | 637979..638596 (+) | 618 | WP_011784269.1 | PilN domain-containing protein | - |
| MARHY_RS02955 (MARHY0617) | - | 638593..639282 (+) | 690 | WP_011784270.1 | type II secretion system protein GspM | - |
| MARHY_RS02960 (MARHY0618) | - | 639284..639613 (+) | 330 | WP_011784271.1 | hypothetical protein | - |
| MARHY_RS02965 (MARHY0619) | mshL | 639610..641328 (+) | 1719 | WP_011784272.1 | pilus (MSHA type) biogenesis protein MshL | - |
Sequence
Protein
Download Length: 174 a.a. Molecular weight: 19145.24 Da Isoelectric Point: 4.9464
>NTDB_id=44696 MARHY_RS02940 WP_014420498.1 636319..636843(+) (ssb) [Marinobacter nauticus ATCC 49840]
MARGVNKVILIGNLGQDPDTRYTPNGNAVVNLNLATDESYKDRQTGQMVPKTEWHRVVLFGKVAEVAGQYLRKGSKVYIE
GKLQTRKWQNKEGQDVYTTEVVVDINGQMQMLDSRGSEGGMNQGAPQGRPQQQPQYNAPPQQGGQAGGYNNPPPQQQGGG
MPEPIDDFDDDIPF
MARGVNKVILIGNLGQDPDTRYTPNGNAVVNLNLATDESYKDRQTGQMVPKTEWHRVVLFGKVAEVAGQYLRKGSKVYIE
GKLQTRKWQNKEGQDVYTTEVVVDINGQMQMLDSRGSEGGMNQGAPQGRPQQQPQYNAPPQQGGQAGGYNNPPPQQQGGG
MPEPIDDFDDDIPF
Nucleotide
Download Length: 525 bp
>NTDB_id=44696 MARHY_RS02940 WP_014420498.1 636319..636843(+) (ssb) [Marinobacter nauticus ATCC 49840]
ATGGCACGAGGCGTAAACAAGGTAATTCTCATTGGTAACCTGGGGCAGGACCCGGACACTCGCTATACCCCCAACGGCAA
CGCTGTGGTTAACCTGAACCTCGCCACAGACGAGAGTTACAAGGATCGCCAGACCGGACAGATGGTGCCGAAGACCGAGT
GGCATCGGGTTGTGCTGTTCGGCAAGGTGGCTGAAGTGGCTGGGCAATACCTGCGCAAAGGCTCCAAGGTCTACATTGAG
GGCAAGCTGCAGACCCGGAAATGGCAGAACAAGGAAGGGCAGGATGTGTACACCACCGAAGTGGTTGTGGATATCAATGG
CCAGATGCAGATGCTGGACAGCCGCGGTTCCGAGGGTGGCATGAATCAAGGGGCGCCCCAGGGTCGGCCGCAGCAACAGC
CGCAATACAATGCACCACCCCAGCAGGGTGGGCAGGCCGGTGGCTACAACAACCCACCGCCACAGCAGCAGGGTGGCGGC
ATGCCCGAGCCGATTGATGACTTTGACGACGACATTCCCTTCTGA
ATGGCACGAGGCGTAAACAAGGTAATTCTCATTGGTAACCTGGGGCAGGACCCGGACACTCGCTATACCCCCAACGGCAA
CGCTGTGGTTAACCTGAACCTCGCCACAGACGAGAGTTACAAGGATCGCCAGACCGGACAGATGGTGCCGAAGACCGAGT
GGCATCGGGTTGTGCTGTTCGGCAAGGTGGCTGAAGTGGCTGGGCAATACCTGCGCAAAGGCTCCAAGGTCTACATTGAG
GGCAAGCTGCAGACCCGGAAATGGCAGAACAAGGAAGGGCAGGATGTGTACACCACCGAAGTGGTTGTGGATATCAATGG
CCAGATGCAGATGCTGGACAGCCGCGGTTCCGAGGGTGGCATGAATCAAGGGGCGCCCCAGGGTCGGCCGCAGCAACAGC
CGCAATACAATGCACCACCCCAGCAGGGTGGGCAGGCCGGTGGCTACAACAACCCACCGCCACAGCAGCAGGGTGGCGGC
ATGCCCGAGCCGATTGATGACTTTGACGACGACATTCCCTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
57.143 |
100 |
0.575 |
| ssb | Glaesserella parasuis strain SC1401 |
54.054 |
100 |
0.575 |
| ssb | Neisseria meningitidis MC58 |
43.646 |
100 |
0.454 |
| ssb | Neisseria gonorrhoeae MS11 |
43.646 |
100 |
0.454 |