Detailed information NTG0446886

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: HPQ68_RS09410
• Genome accession: NZ_CP053748
• Coordinates: 2080880..2081377 (+)
• Length: 165 a.a.
• NCBI ID: WP_050410784.1
• Uniprot ID: -
• Organism: Massilia sp. erpn
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	2081533..2094038	2080880..2081377	flank	156
IScluster/Tn	2081533..2083459	2080880..2081377	flank	156

Gene organization within MGE regions

Location: 2080880..2094038

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPQ68_RS09410 (HPQ68_09375)	ssb	2080880..2081377 (+)	498	WP_050410784.1	single-stranded DNA-binding protein	Machinery gene
HPQ68_RS09415 (HPQ68_09380)	-	2081533..2082299 (-)	767	Protein_1842	IS256 family transposase	-
HPQ68_RS09420 (HPQ68_09385)	-	2082327..2083148 (-)	822	WP_255757442.1	IS3 family transposase	-
HPQ68_RS09425 (HPQ68_09390)	-	2083145..2083474 (-)	330	WP_255758255.1	DUF1153 domain-containing protein	-
HPQ68_RS09430 (HPQ68_09395)	-	2084037..2085365 (-)	1329	WP_255757443.1	McrC family protein	-
HPQ68_RS09435 (HPQ68_09400)	-	2085478..2086326 (-)	849	WP_255758256.1	McrB family protein	-
HPQ68_RS09440	-	2086336..2086548 (-)	213	Protein_1847	translation initiation factor IF-2 N-terminal domain-containing protein	-
HPQ68_RS09445 (HPQ68_09405)	-	2086900..2087616 (+)	717	WP_255757444.1	hypothetical protein	-
HPQ68_RS27340 (HPQ68_09410)	-	2087880..2088278 (+)	399	WP_374040908.1	hypothetical protein	-
HPQ68_RS09455 (HPQ68_09415)	-	2088306..2089220 (-)	915	WP_255757445.1	GIY-YIG nuclease family protein	-
HPQ68_RS09460 (HPQ68_09420)	-	2089330..2089743 (-)	414	WP_255757446.1	DUF1249 domain-containing protein	-
HPQ68_RS09465 (HPQ68_09425)	-	2090000..2090830 (+)	831	WP_255757447.1	hypothetical protein	-
HPQ68_RS09470 (HPQ68_09430)	-	2090823..2091392 (+)	570	WP_255757448.1	hypothetical protein	-
HPQ68_RS09475 (HPQ68_09435)	-	2091435..2091803 (-)	369	WP_255757449.1	transposase	-
HPQ68_RS09480 (HPQ68_09440)	-	2092152..2093345 (+)	1194	WP_255757450.1	HNH endonuclease	-
HPQ68_RS09485 (HPQ68_09445)	-	2093721..2094038 (-)	318	WP_255757451.1	CcdB family protein	-

Sequence

Protein

• Length: 165 a.a.
• Molecular weight: 17908.20 Da
• Isoelectric Point: 5.9417

>NTDB_id=446886 HPQ68_RS09410 WP_050410784.1 2080880..2081377(+) (ssb) [Massilia sp. erpn]
MASVNKVIIVGNLGRDPEIRYMPSGDAIANIAVATSYKSKDRNTGEQKELTEWHRISFFGRLAEIVGQYLKKGSSVYVEG
RLQTRKYTDKDGVEKYATDIIAENMQMLGGRQGMGGGDSMDDGMGYDAAPVSRPAPRPAPAPAPAPRPAARPAPNFSDMD
DDIPF

Nucleotide

• Length: 498 bp

>NTDB_id=446886 HPQ68_RS09410 WP_050410784.1 2080880..2081377(+) (ssb) [Massilia sp. erpn]
ATGGCATCTGTCAACAAAGTCATCATCGTCGGCAATCTGGGCCGTGACCCGGAGATTCGCTACATGCCTAGCGGTGATGC
CATCGCCAATATCGCCGTCGCCACCTCCTACAAGAGCAAGGACCGCAACACCGGTGAGCAGAAAGAGCTGACCGAATGGC
ACCGCATTTCCTTCTTCGGCCGCCTGGCTGAAATCGTGGGCCAGTACCTGAAAAAAGGCTCCTCCGTCTACGTCGAAGGC
CGCCTGCAAACCCGCAAGTACACCGACAAGGATGGCGTCGAGAAATACGCGACCGACATCATCGCTGAAAACATGCAGAT
GCTGGGTGGCCGCCAAGGCATGGGCGGTGGCGACTCGATGGATGACGGCATGGGCTACGACGCCGCGCCGGTGAGCCGTC
CAGCACCGCGTCCGGCGCCAGCTCCGGCCCCGGCGCCACGTCCGGCCGCGCGTCCAGCGCCGAACTTCTCGGATATGGAT
GACGATATTCCCTTCTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (4-108)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Neisseria gonorrhoeae MS11	51.977	100	0.558
ssb	Neisseria meningitidis MC58	51.412	100	0.552
ssb	Vibrio cholerae strain A1552	50.562	100	0.545
ssb	Glaesserella parasuis strain SC1401	48.066	100	0.527