Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   C270_RS06895 Genome accession   NC_018673
Coordinates   1407705..1408016 (-) Length   103 a.a.
NCBI ID   WP_014974861.1    Uniprot ID   K0DE46
Organism   Leuconostoc carnosum JB16     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1402705..1413016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C270_RS06865 (C270_06680) - 1404017..1405273 (-) 1257 WP_014974855.1 acetate kinase -
  C270_RS06870 (C270_06685) - 1405400..1406413 (-) 1014 WP_014974856.1 class I SAM-dependent methyltransferase -
  C270_RS06875 (C270_06690) - 1406445..1406741 (-) 297 WP_014974857.1 hypothetical protein -
  C270_RS06880 (C270_06695) - 1406742..1407158 (-) 417 WP_014974858.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  C270_RS09030 (C270_06700) - 1407142..1407354 (-) 213 WP_014974859.1 hypothetical protein -
  C270_RS06890 (C270_06705) - 1407329..1407721 (-) 393 WP_014974860.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  C270_RS06895 (C270_06710) comGC 1407705..1408016 (-) 312 WP_014974861.1 competence type IV pilus major pilin ComGC Machinery gene
  C270_RS06900 (C270_06715) - 1408013..1409050 (-) 1038 WP_014974862.1 type II secretion system F family protein -
  C270_RS06905 (C270_06720) comGA 1408992..1409948 (-) 957 WP_014974863.1 competence type IV pilus ATPase ComGA Machinery gene
  C270_RS06910 (C270_06725) - 1410046..1411398 (-) 1353 WP_014974864.1 glucose-6-phosphate isomerase -
  C270_RS06915 (C270_06730) nagB 1411522..1412223 (-) 702 WP_014974865.1 glucosamine-6-phosphate deaminase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 11774.73 Da        Isoelectric Point: 9.6271

>NTDB_id=44683 C270_RS06895 WP_014974861.1 1407705..1408016(-) (comGC) [Leuconostoc carnosum JB16]
MILLKRRKSAFTLIEAAIVLFIISLLMLLILPNLNNQRKKAVDTHATAMVSTVQTQIDLYENEHPQNHNVTMDNLVHDGY
LTNKQVQKVKDLNITITNNEAHK

Nucleotide


Download         Length: 312 bp        

>NTDB_id=44683 C270_RS06895 WP_014974861.1 1407705..1408016(-) (comGC) [Leuconostoc carnosum JB16]
ATGATATTATTAAAACGTCGTAAATCAGCTTTTACATTAATTGAAGCAGCTATTGTACTATTTATCATTAGTTTACTAAT
GCTACTGATTTTACCCAATCTTAACAATCAACGTAAAAAAGCTGTTGATACACATGCAACTGCGATGGTATCAACAGTTC
AGACACAAATCGATCTATATGAGAACGAACATCCACAAAATCATAATGTAACGATGGATAATTTAGTACACGATGGTTAT
TTAACCAATAAGCAGGTACAAAAAGTTAAAGATTTAAATATTACAATTACCAATAATGAAGCACACAAATAG

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-30)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K0DE46

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus MW2

37.624

98.058

0.369
  comGC Staphylococcus aureus N315

37.624

98.058

0.369
  comGC Latilactobacillus sakei subsp. sakei 23K

39.175

94.175

0.369

Multiple sequence alignment