Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   FX982_RS10825 Genome accession   NZ_CP053746
Coordinates   2400678..2402018 (-) Length   446 a.a.
NCBI ID   WP_172610633.1    Uniprot ID   A0A6M8MJQ6
Organism   Pseudomonas graminis strain PgKB30     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2395678..2407018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FX982_RS10810 (FX982_02165) - 2395990..2399061 (+) 3072 WP_172610631.1 pilus assembly protein -
  FX982_RS10815 (FX982_02166) - 2399073..2399465 (+) 393 WP_172610632.1 type IV pilin protein -
  FX982_RS10820 (FX982_02167) thiO 2399496..2400599 (+) 1104 WP_172613029.1 glycine oxidase ThiO -
  FX982_RS10825 (FX982_02168) pilR 2400678..2402018 (-) 1341 WP_172610633.1 sigma-54 dependent transcriptional regulator Regulator
  FX982_RS10830 (FX982_02169) pilS 2402021..2403613 (-) 1593 WP_172610634.1 PAS domain-containing sensor histidine kinase Regulator
  FX982_RS10835 (FX982_02170) - 2403603..2403842 (-) 240 WP_122535374.1 PP0621 family protein -
  FX982_RS10840 (FX982_02171) - 2403995..2405017 (-) 1023 WP_122535375.1 outer membrane protein assembly factor BamD -
  FX982_RS10845 (FX982_02172) rluD 2405169..2406131 (+) 963 WP_074890541.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  FX982_RS10850 (FX982_02173) pgeF 2406140..2406868 (+) 729 WP_172610635.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 50280.58 Da        Isoelectric Point: 6.6689

>NTDB_id=446825 FX982_RS10825 WP_172610633.1 2400678..2402018(-) (pilR) [Pseudomonas graminis strain PgKB30]
MSQRQKILIVDDEPDIRELLEITLGRMKLDTRSARNVKEAQEWLAREAFDLCLTDMRLPDGNGLELVQHIQKRHNQVPVA
MITAHGSLDTAIHALKAGAFDFLTKPVDLTRLRELVTSALRLRIAPAEDNRIDHRLLGSSPPMQALRKQIAKLARSQAPI
YISGESGSGKELVARLIHEQGPRAEQSFVPVNCGAIPSELMESEFFGHRKGSFTGAHEDKPGLFQVANGGTLFLDEVADL
PLAMQVKLLRAIQEKSVRAIGGQQEQVVDVRVLCATHKDLNQEVAAGRFRQDLYYRLNVIELRVPPLRERREDIEEIANS
VLRRLAESAGEPATLLPPHALAALKGYRFPGNVRELENMLERAYTLCDNDQINIEDLRLAEPSRPTEQDGPSLANIDNLE
DYLESIERKLILQALEETRWNRTAAAQRLNLTFRSMRYRLKKLGLE

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=446825 FX982_RS10825 WP_172610633.1 2400678..2402018(-) (pilR) [Pseudomonas graminis strain PgKB30]
ATGAGCCAACGGCAAAAGATCCTGATCGTCGACGATGAGCCGGACATTCGTGAGTTGCTGGAAATCACGCTCGGACGGAT
GAAACTGGACACTCGCAGCGCGCGCAACGTCAAGGAAGCCCAGGAGTGGCTGGCGCGCGAGGCATTCGACCTGTGCCTGA
CCGACATGCGTCTGCCGGATGGCAATGGCCTGGAGTTGGTGCAGCACATTCAGAAGCGCCACAACCAGGTACCGGTGGCG
ATGATCACCGCCCACGGCAGCCTCGACACGGCAATCCATGCACTGAAAGCCGGCGCGTTCGACTTCTTGACCAAGCCGGT
CGACCTGACGCGATTACGTGAGTTGGTGACCAGCGCCTTGCGCCTGCGCATCGCCCCTGCCGAAGACAACCGCATCGACC
ATCGCCTGCTGGGCAGCTCTCCACCGATGCAGGCGCTGCGTAAGCAAATCGCCAAACTGGCGCGTAGCCAGGCGCCGATC
TATATCAGCGGCGAGTCGGGCAGCGGCAAGGAGCTGGTCGCACGGTTGATTCACGAGCAAGGCCCGCGCGCCGAGCAGTC
GTTCGTACCCGTCAACTGTGGCGCGATCCCGTCGGAACTGATGGAAAGCGAATTCTTCGGGCACCGCAAAGGCAGTTTCA
CTGGCGCCCATGAAGACAAACCCGGGCTGTTTCAAGTGGCCAATGGCGGGACGCTGTTTCTGGATGAAGTGGCTGATCTG
CCGCTGGCGATGCAGGTGAAGCTGCTCCGCGCGATCCAGGAAAAATCCGTTCGCGCGATTGGCGGCCAGCAGGAGCAAGT
GGTGGACGTTCGCGTGCTGTGCGCGACTCACAAGGACCTCAATCAGGAAGTAGCCGCCGGGCGTTTTCGGCAGGATTTGT
ATTACCGGCTGAACGTCATCGAACTGCGCGTCCCGCCCCTGCGCGAGCGCCGCGAAGACATTGAAGAGATCGCCAACAGC
GTGCTGCGCCGCCTGGCCGAATCCGCCGGAGAGCCTGCCACCCTTCTCCCGCCCCACGCGCTGGCGGCCCTCAAGGGCTA
CCGTTTTCCCGGCAATGTGCGCGAGCTGGAAAACATGCTGGAACGTGCATACACACTCTGCGATAACGATCAGATCAATA
TCGAGGACCTGCGCCTTGCCGAGCCGTCACGCCCTACTGAGCAGGACGGCCCGAGCCTGGCCAACATCGATAACCTGGAA
GACTATCTGGAGAGCATCGAGCGCAAACTGATCCTGCAGGCGCTGGAGGAAACTCGCTGGAATCGTACGGCGGCGGCGCA
GCGCTTGAATTTGACGTTCAGGTCGATGCGTTATCGGCTGAAGAAGCTGGGGCTGGAGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)

Sigma-54 interaction domain (Sigma54_activat)

(137-302)

Response regulator receiver domain (Response_reg)

(7-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6M8MJQ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

80.135

99.327

0.796
  pilR Acinetobacter baumannii strain A118

48.164

100

0.5
  luxO Vibrio cholerae strain A1552

38.202

99.776

0.381