Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   FX982_RS10830 Genome accession   NZ_CP053746
Coordinates   2402021..2403613 (-) Length   530 a.a.
NCBI ID   WP_172610634.1    Uniprot ID   A0A6M8MND1
Organism   Pseudomonas graminis strain PgKB30     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2397021..2408613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FX982_RS10815 (FX982_02166) - 2399073..2399465 (+) 393 WP_172610632.1 type IV pilin protein -
  FX982_RS10820 (FX982_02167) thiO 2399496..2400599 (+) 1104 WP_172613029.1 glycine oxidase ThiO -
  FX982_RS10825 (FX982_02168) pilR 2400678..2402018 (-) 1341 WP_172610633.1 sigma-54 dependent transcriptional regulator Regulator
  FX982_RS10830 (FX982_02169) pilS 2402021..2403613 (-) 1593 WP_172610634.1 PAS domain-containing sensor histidine kinase Regulator
  FX982_RS10835 (FX982_02170) - 2403603..2403842 (-) 240 WP_122535374.1 PP0621 family protein -
  FX982_RS10840 (FX982_02171) - 2403995..2405017 (-) 1023 WP_122535375.1 outer membrane protein assembly factor BamD -
  FX982_RS10845 (FX982_02172) rluD 2405169..2406131 (+) 963 WP_074890541.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  FX982_RS10850 (FX982_02173) pgeF 2406140..2406868 (+) 729 WP_172610635.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58391.53 Da        Isoelectric Point: 6.5041

>NTDB_id=446826 FX982_RS10830 WP_172610634.1 2402021..2403613(-) (pilS) [Pseudomonas graminis strain PgKB30]
MTADSLSLTTPQAQRILRLYHLYRLSIGVLLVLLISSSLDAELLELADIELFRIGCWLYLVFNILVVVLLERPSRQGQLF
SLAMADTLMLAALFYAGGGAPSGIGNLIIASVAISNVLLRKRTGLLIAALSAIGIIYLTFYISYHKPSAANHFVQAGSLG
ALCFAAALLVQALARRLQLSEDIAERRAADVDNLEELNALILQRMRTGILVLDEDHKVLLANQSALNLLGHERLLGEIVD
AYSPQLVERLAQWTTNPSMAPRSITTSAIGPVLRPGFIALARGSHRHTLVFLDDLSQISQQAQQLKLAALGRLTAGIAHE
IRNPLGAISHAAQLLLESEELTAPDRRLSQIIHDQSRRMNLVIENVLQLSRRRQTEPHLLDLKGWIEDFVRNLRGDLMAD
QAVHLDIGPGVLSTQMDAEQLQQVMSNLVQNGLRYSGQLHEHAQVWLRLFQAPFSELPTLEVLDDGPGVAEEHLGKIFEP
FFTTESKGTGLGLYLSRELCESNQASLNYTPREGGGSCMRITFAHPFKLS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=446826 FX982_RS10830 WP_172610634.1 2402021..2403613(-) (pilS) [Pseudomonas graminis strain PgKB30]
GTGACCGCTGACAGCCTGTCGCTGACCACGCCACAGGCCCAACGCATCCTGCGGCTGTATCACCTGTACCGTCTGAGCAT
CGGCGTCCTGCTGGTGCTGCTGATTTCCAGCAGCCTGGACGCCGAGTTGCTGGAACTGGCCGATATCGAGCTGTTCCGGA
TCGGCTGCTGGCTGTATCTGGTGTTCAACATCCTCGTGGTCGTGCTGCTTGAGCGCCCGAGCCGCCAGGGGCAACTGTTC
TCCCTGGCCATGGCCGACACGCTGATGCTGGCCGCGCTGTTCTATGCCGGAGGCGGTGCACCGAGCGGTATTGGCAATTT
GATCATTGCCTCCGTGGCGATCAGCAACGTGCTGCTGCGCAAGCGAACCGGGCTGCTGATTGCCGCGCTCTCAGCCATCG
GCATCATTTATCTGACCTTCTACATCAGCTATCACAAGCCCTCCGCTGCCAATCATTTCGTGCAGGCCGGCTCCCTCGGT
GCCCTGTGCTTCGCAGCAGCGCTGCTGGTTCAGGCCCTCGCACGACGCCTACAGCTCAGCGAAGACATCGCCGAACGTCG
CGCCGCCGATGTCGATAATCTTGAAGAGCTCAACGCGCTGATCCTGCAACGCATGCGGACCGGCATATTGGTACTCGACG
AAGATCACAAAGTGCTGCTCGCCAACCAGAGCGCGCTGAACCTGTTGGGCCACGAGCGCCTGCTCGGCGAAATCGTCGAC
GCCTACTCGCCGCAACTGGTCGAGCGCCTGGCTCAGTGGACGACCAACCCGTCCATGGCACCGCGCAGCATCACGACATC
GGCCATCGGTCCGGTGCTGCGTCCGGGGTTCATCGCACTGGCGCGGGGCAGCCATCGCCACACCCTGGTGTTTCTCGATG
ACCTGTCCCAGATTTCCCAGCAGGCCCAACAGCTCAAACTCGCCGCGCTGGGCAGACTGACCGCTGGCATCGCCCACGAG
ATCCGCAACCCGCTGGGCGCCATCAGTCATGCCGCACAGCTGCTGTTGGAATCCGAGGAACTGACCGCGCCGGACCGTCG
TCTCAGTCAAATCATTCACGATCAATCGCGGCGGATGAATCTGGTGATCGAGAACGTTCTGCAGCTGTCTCGTCGACGTC
AGACCGAACCCCACCTGCTCGATCTCAAGGGGTGGATCGAGGACTTCGTCCGTAACCTGCGCGGTGACCTGATGGCTGAT
CAGGCCGTGCATCTGGATATCGGTCCGGGCGTGCTCAGTACGCAGATGGACGCGGAGCAGTTGCAGCAAGTGATGAGCAA
TCTGGTGCAAAACGGGCTGCGCTACAGCGGCCAGCTGCACGAACACGCCCAAGTGTGGCTAAGGTTGTTTCAAGCCCCGT
TCAGCGAACTGCCGACGCTGGAAGTCCTCGACGACGGGCCGGGTGTTGCCGAAGAGCATCTCGGGAAAATCTTCGAGCCC
TTCTTCACCACCGAAAGCAAAGGAACCGGGCTGGGCCTGTACCTTTCGCGCGAGCTGTGCGAAAGCAATCAGGCGAGCCT
TAATTACACTCCACGGGAAGGTGGCGGTAGCTGCATGCGAATAACCTTCGCCCATCCGTTCAAGCTGAGCTGA

Domains

Predicted by InterproScan.

PAS domain (PAS_8)

(202-244)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6M8MND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

62.9

100

0.63