Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FX982_RS05025 Genome accession   NZ_CP053746
Coordinates   1110859..1111389 (-) Length   176 a.a.
NCBI ID   WP_172609872.1    Uniprot ID   -
Organism   Pseudomonas graminis strain PgKB30     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1105859..1116389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FX982_RS05010 (FX982_01010) - 1107248..1109602 (+) 2355 WP_172609870.1 FdhF/YdeP family oxidoreductase -
  FX982_RS05015 (FX982_01011) - 1109660..1110238 (+) 579 WP_172612987.1 TetR/AcrR family transcriptional regulator -
  FX982_RS05020 (FX982_01012) - 1110288..1110767 (+) 480 WP_172609871.1 nuclear transport factor 2 family protein -
  FX982_RS05025 (FX982_01013) ssb 1110859..1111389 (-) 531 WP_172609872.1 single-stranded DNA-binding protein Machinery gene
  FX982_RS05030 (FX982_01014) - 1111399..1112793 (-) 1395 WP_172609873.1 MFS transporter -
  FX982_RS05035 (FX982_01015) uvrA 1112984..1115818 (+) 2835 WP_172609874.1 excinuclease ABC subunit UvrA -
  FX982_RS05040 (FX982_01016) bfr 1115891..1116355 (-) 465 WP_122623962.1 bacterioferritin -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19429.61 Da        Isoelectric Point: 5.9455

>NTDB_id=446813 FX982_RS05025 WP_172609872.1 1110859..1111389(-) (ssb) [Pseudomonas graminis strain PgKB30]
MARGVNKVILVGTCGQDPEVRYMPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDGAPQGQGGGGYQNSAPRPQQQARPQQSAPQPQRESRPAPQQA
PQPAPDFDSFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=446813 FX982_RS05025 WP_172609872.1 1110859..1111389(-) (ssb) [Pseudomonas graminis strain PgKB30]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACATGCGGCCAGGATCCCGAAGTCCGCTACATGCCTAACGGTAA
TGCCGTGACCAACCTGAGTCTGGCAACAAGCGAACAGTGGACCGATAAGCAAACCGGTCAGAAGGTCGAGAAGACCGAAT
GGCACCGTGTTTCGATGTTCGGCAAGGTCGCCGAGATCGCTGGCGAGTACCTGCGCAAGGGTTCACAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACGACCGAAATCGTCGTCGACATGCAAGGCAC
CATGCAGTTGCTGGGTGGCCGTCCTCAAGGCGACGGTGCTCCTCAGGGTCAGGGTGGTGGCGGTTATCAGAACTCCGCGC
CGCGTCCGCAGCAGCAGGCCCGTCCGCAGCAGTCCGCTCCTCAGCCACAGCGTGAATCACGTCCTGCGCCTCAACAAGCG
CCGCAGCCAGCGCCTGATTTCGACAGCTTCGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.889

100

0.602
  ssb Neisseria meningitidis MC58

51.136

100

0.511
  ssb Neisseria gonorrhoeae MS11

51.136

100

0.511
  ssb Glaesserella parasuis strain SC1401

49.171

100

0.506