Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   HPY04_RS12020 Genome accession   NZ_CP053744
Coordinates   2672226..2672870 (+) Length   214 a.a.
NCBI ID   WP_001188315.1    Uniprot ID   -
Organism   Vibrio cholerae strain SA3G     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2649631..2671934 2672226..2672870 flank 292


Gene organization within MGE regions


Location: 2649631..2672870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY04_RS11935 (HPY04_11945) - 2649631..2650476 (-) 846 WP_000281361.1 ExeA family protein -
  HPY04_RS11940 (HPY04_11950) mshL 2650481..2652160 (-) 1680 WP_175249145.1 pilus (MSHA type) biogenesis protein MshL -
  HPY04_RS11945 (HPY04_11955) - 2652175..2652492 (-) 318 WP_000252812.1 MSHA biogenesis protein MshK -
  HPY04_RS11950 (HPY04_11960) gspM 2652485..2653135 (-) 651 WP_053037476.1 type II secretion system protein GspM -
  HPY04_RS11955 (HPY04_11965) - 2653132..2654571 (-) 1440 WP_000743253.1 PilN domain-containing protein -
  HPY04_RS11960 (HPY04_11970) csrD 2654584..2656596 (-) 2013 WP_175249146.1 RNase E specificity factor CsrD -
  HPY04_RS11965 (HPY04_11975) - 2657261..2657521 (+) 261 WP_175249147.1 hypothetical protein -
  HPY04_RS11970 (HPY04_11980) - 2658066..2659979 (-) 1914 WP_175249148.1 AAA family ATPase -
  HPY04_RS11975 (HPY04_11985) - 2659989..2661665 (-) 1677 WP_175249149.1 restriction endonuclease subunit S -
  HPY04_RS11980 (HPY04_11990) - 2661662..2663128 (-) 1467 WP_008486744.1 class I SAM-dependent DNA methyltransferase -
  HPY04_RS11985 (HPY04_11995) hsdR 2663186..2665579 (-) 2394 WP_008486743.1 EcoAI/FtnUII family type I restriction enzme subunit R -
  HPY04_RS11990 (HPY04_12000) - 2665620..2665859 (-) 240 WP_175249150.1 transcription factor -
  HPY04_RS11995 (HPY04_12005) - 2665949..2666425 (-) 477 WP_175249151.1 protein kinase -
  HPY04_RS12000 (HPY04_12010) - 2666418..2668427 (-) 2010 WP_175249152.1 integrase -
  HPY04_RS12005 (HPY04_12015) - 2668420..2670003 (-) 1584 WP_175249153.1 site-specific integrase -
  HPY04_RS12010 (HPY04_12020) - 2670009..2671181 (-) 1173 WP_000687778.1 site-specific integrase -
  HPY04_RS12015 (HPY04_12025) ssb 2671401..2671934 (-) 534 WP_000168287.1 single-stranded DNA-binding protein Machinery gene
  HPY04_RS12020 (HPY04_12030) qstR 2672226..2672870 (+) 645 WP_001188315.1 LuxR C-terminal-related transcriptional regulator Regulator

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24708.52 Da        Isoelectric Point: 9.6461

>NTDB_id=446800 HPY04_RS12020 WP_001188315.1 2672226..2672870(+) (qstR) [Vibrio cholerae strain SA3G]
MQRANYARTIYLLTTQPKALHPSIQAAIEQLNLPVPVIEPERLLREYQSDKHKILLLDHAENGLIRQQLGPLKLTSPYFE
TILFNVEKRLRTEDLLTFGNLKGLFYANEDTGFIAHGLGEIINGQNWLPRHVSSQLLHYYRYAFQSHQAQATVDLTAREI
QILRCLQTGASNMQIAENLFISEFTVKSHLYQIFKKLNVKNRVKAIAWVNQNLL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=446800 HPY04_RS12020 WP_001188315.1 2672226..2672870(+) (qstR) [Vibrio cholerae strain SA3G]
ATGCAACGAGCCAACTATGCACGCACGATTTATTTATTAACGACACAGCCAAAAGCGTTACATCCCAGTATTCAAGCCGC
CATTGAGCAGTTGAATCTGCCCGTCCCGGTGATTGAACCAGAACGCTTATTGCGCGAGTATCAATCCGATAAACACAAAA
TATTGTTGCTCGACCATGCGGAAAATGGCCTGATTCGCCAGCAATTGGGTCCCCTCAAGCTTACCAGCCCGTACTTCGAA
ACCATCTTGTTTAATGTCGAGAAACGGTTAAGAACGGAAGATCTGCTCACTTTTGGCAACCTCAAAGGTCTGTTTTATGC
CAATGAAGATACAGGCTTTATTGCCCACGGTCTTGGGGAGATCATTAATGGCCAAAACTGGCTACCTCGTCATGTCAGCA
GTCAGTTACTCCATTACTATCGTTACGCTTTCCAAAGCCATCAAGCTCAAGCAACGGTCGATTTGACTGCACGTGAAATA
CAGATCCTGCGCTGTTTACAAACTGGCGCATCGAATATGCAAATCGCTGAGAATTTATTTATTAGTGAGTTCACGGTGAA
ATCGCATCTTTATCAGATATTTAAAAAGTTAAACGTGAAAAATCGAGTCAAAGCGATCGCTTGGGTTAATCAAAATTTAC
TGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

99.533

100

0.995
  qstR Vibrio campbellii strain DS40M4

52.804

100

0.528
  qstR Vibrio parahaemolyticus RIMD 2210633

52.558

100

0.528