Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HPY04_RS12015 Genome accession   NZ_CP053744
Coordinates   2671401..2671934 (-) Length   177 a.a.
NCBI ID   WP_000168287.1    Uniprot ID   A0A2A1YRC3
Organism   Vibrio cholerae strain SA3G     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2649631..2671934 2671401..2671934 within 0


Gene organization within MGE regions


Location: 2649631..2671934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY04_RS11935 (HPY04_11945) - 2649631..2650476 (-) 846 WP_000281361.1 ExeA family protein -
  HPY04_RS11940 (HPY04_11950) mshL 2650481..2652160 (-) 1680 WP_175249145.1 pilus (MSHA type) biogenesis protein MshL -
  HPY04_RS11945 (HPY04_11955) - 2652175..2652492 (-) 318 WP_000252812.1 MSHA biogenesis protein MshK -
  HPY04_RS11950 (HPY04_11960) gspM 2652485..2653135 (-) 651 WP_053037476.1 type II secretion system protein GspM -
  HPY04_RS11955 (HPY04_11965) - 2653132..2654571 (-) 1440 WP_000743253.1 PilN domain-containing protein -
  HPY04_RS11960 (HPY04_11970) csrD 2654584..2656596 (-) 2013 WP_175249146.1 RNase E specificity factor CsrD -
  HPY04_RS11965 (HPY04_11975) - 2657261..2657521 (+) 261 WP_175249147.1 hypothetical protein -
  HPY04_RS11970 (HPY04_11980) - 2658066..2659979 (-) 1914 WP_175249148.1 AAA family ATPase -
  HPY04_RS11975 (HPY04_11985) - 2659989..2661665 (-) 1677 WP_175249149.1 restriction endonuclease subunit S -
  HPY04_RS11980 (HPY04_11990) - 2661662..2663128 (-) 1467 WP_008486744.1 class I SAM-dependent DNA methyltransferase -
  HPY04_RS11985 (HPY04_11995) hsdR 2663186..2665579 (-) 2394 WP_008486743.1 EcoAI/FtnUII family type I restriction enzme subunit R -
  HPY04_RS11990 (HPY04_12000) - 2665620..2665859 (-) 240 WP_175249150.1 transcription factor -
  HPY04_RS11995 (HPY04_12005) - 2665949..2666425 (-) 477 WP_175249151.1 protein kinase -
  HPY04_RS12000 (HPY04_12010) - 2666418..2668427 (-) 2010 WP_175249152.1 integrase -
  HPY04_RS12005 (HPY04_12015) - 2668420..2670003 (-) 1584 WP_175249153.1 site-specific integrase -
  HPY04_RS12010 (HPY04_12020) - 2670009..2671181 (-) 1173 WP_000687778.1 site-specific integrase -
  HPY04_RS12015 (HPY04_12025) ssb 2671401..2671934 (-) 534 WP_000168287.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19644.85 Da        Isoelectric Point: 5.7626

>NTDB_id=446799 HPY04_RS12015 WP_000168287.1 2671401..2671934(-) (ssb) [Vibrio cholerae strain SA3G]
MASRGVNKVILIGNLGQDPEVRYMPSGGAVANITIATSETWRDKATGEQKEKTEWHRVTLYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGYNGIMQMLGGRAQQGGMPAQGGMNAPAQQGSWGQPQQPAKQHQPMQQSAPQQYS
QPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=446799 HPY04_RS12015 WP_000168287.1 2671401..2671934(-) (ssb) [Vibrio cholerae strain SA3G]
ATGGCAAGCCGTGGCGTGAACAAAGTAATTTTGATTGGTAACTTAGGCCAAGATCCTGAAGTGCGTTATATGCCAAGCGG
CGGCGCAGTAGCGAATATCACCATCGCGACCTCCGAAACTTGGCGTGATAAAGCCACAGGTGAACAGAAGGAAAAAACCG
AATGGCACCGAGTTACTCTGTATGGAAAATTGGCAGAAGTGGCCGGTGAATATTTGCGCAAAGGTTCTCAAGTTTACATT
GAAGGCCAACTGCAAACGCGTAAGTGGCAAGATCAAAGTGGTCAAGATCGCTACTCAACCGAAGTGGTTGTACAAGGCTA
TAACGGCATCATGCAGATGCTGGGTGGACGTGCACAGCAAGGTGGAATGCCAGCCCAAGGCGGCATGAATGCTCCTGCGC
AGCAAGGAAGTTGGGGACAACCACAACAACCGGCGAAGCAGCATCAGCCTATGCAACAATCTGCGCCTCAACAGTACTCG
CAACCGCAGTATAATGAGCCGCCGATGGATTTTGATGACGACATCCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A1YRC3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

99.435

100

0.994
  ssb Glaesserella parasuis strain SC1401

52.198

100

0.537
  ssb Neisseria meningitidis MC58

47.778

100

0.486
  ssb Neisseria gonorrhoeae MS11

47.778

100

0.486