Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   C270_RS06300 Genome accession   NC_018673
Coordinates   1284695..1286701 (-) Length   668 a.a.
NCBI ID   WP_014974741.1    Uniprot ID   K0DDQ1
Organism   Leuconostoc carnosum JB16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1279695..1291701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C270_RS06290 (C270_06095) - 1280318..1281292 (-) 975 WP_014974738.1 gluconeogenesis factor YvcK family protein -
  C270_RS09015 (C270_06100) - 1281532..1281654 (+) 123 WP_014974739.1 putative metal homeostasis protein -
  C270_RS06295 (C270_06105) uvrA 1281707..1284571 (-) 2865 WP_014974740.1 excinuclease ABC subunit UvrA Machinery gene
  C270_RS06300 (C270_06110) uvrB 1284695..1286701 (-) 2007 WP_014974741.1 excinuclease ABC subunit UvrB Machinery gene
  C270_RS06305 (C270_06115) - 1286924..1289083 (-) 2160 WP_014974742.1 LTA synthase family protein -
  C270_RS06310 (C270_06120) - 1289152..1289418 (-) 267 WP_014974743.1 DUF1797 family protein -
  C270_RS06315 (C270_06125) - 1289411..1290448 (-) 1038 WP_014974744.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  C270_RS06320 (C270_06130) - 1290470..1291477 (-) 1008 WP_014974745.1 glycosyltransferase -

Sequence

Protein


Download         Length: 668 a.a.        Molecular weight: 76047.05 Da        Isoelectric Point: 4.6189

>NTDB_id=44679 C270_RS06300 WP_014974741.1 1284695..1286701(-) (uvrB) [Leuconostoc carnosum JB16]
MREHVADHGFEVVSKYQPTGDQPRAIDQLVRGINAGVKEQVLLGATGTGKTFTISNVIKDIKKPTLVLSHNKTLAGQLYG
ELKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSAVNDEIDQLRNSATSSLLSRNDVIVVASVSSIFGLGDPHQYQ
EHVINLRVGNEYGRNQLMMDLINVQFTRNDIDFHRGTFRVRGDVVEIFPASEDEMALRVEFFGDEIDRIREINSLTGETS
SERDYVAIYPAKHFMTDDDQMSTALAGITEEMNQQVALFEKEGKLIEAQRIKQRTEYDLAMLEEMGFVGGIENYSRWMDG
RQVDEPPFTLLDFFPDDFLVVVDESHVTMPQIRGMFNGDRARKETLVNYGFRLPSALDNRPLKLPEFEQHVNQIIYMSAT
PGDYELERVTSDHIIQQIIRPTGLLDPEVEVRPVMGQIDDLVGEINKRAQKDERVFITTLTKRMAEDLTDYLKDMGIKVA
YLHADIKTLERTEIIRDLRLGKYDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNPRSLIQTIGRAARNSDGHVIMYA
DKTTRSMKEAMDETARRREIQTQYNVEHGITPTTIKKDIRDLISVRTDSTDNQEVIDLTQVAFKDLPKDEQMSIIGNLEK
QMKAAAKSLDFEEAAQLRDNVMELKAVL

Nucleotide


Download         Length: 2007 bp        

>NTDB_id=44679 C270_RS06300 WP_014974741.1 1284695..1286701(-) (uvrB) [Leuconostoc carnosum JB16]
ATGCGTGAACATGTTGCTGACCACGGCTTTGAAGTGGTTTCAAAATATCAGCCAACAGGCGATCAGCCACGAGCTATTGA
TCAACTCGTGAGGGGTATTAATGCTGGCGTGAAAGAGCAAGTTTTACTTGGTGCTACGGGAACAGGGAAGACTTTCACAA
TTTCTAATGTCATTAAAGATATTAAGAAGCCAACACTGGTATTGAGTCATAATAAGACCTTAGCTGGTCAACTTTATGGT
GAGTTGAAAGAGTTTTTTCCAAATAATGCGGTTGAATATTTTGTGTCCTATTATGATTATTATCAACCAGAAGCTTATGT
CCCTAGTTCTGATACATTTATTGAAAAAGATTCAGCTGTCAATGATGAAATCGATCAATTACGTAACTCAGCAACTAGTT
CGTTGCTATCAAGAAATGATGTCATTGTTGTGGCATCAGTTAGTTCTATTTTTGGATTAGGTGATCCGCATCAGTACCAA
GAACATGTGATTAATTTACGTGTAGGAAATGAATATGGTCGTAATCAGTTAATGATGGATTTGATTAACGTTCAGTTTAC
GCGAAATGATATTGATTTTCACCGTGGTACTTTTCGTGTGCGTGGAGATGTTGTGGAAATTTTCCCAGCATCTGAAGATG
AAATGGCATTACGCGTTGAATTTTTTGGAGATGAAATTGATCGTATTCGTGAAATTAATTCATTAACGGGGGAAACATCA
TCTGAGCGTGACTATGTTGCAATTTATCCAGCTAAACATTTCATGACGGATGATGATCAAATGTCGACTGCTTTGGCAGG
TATTACTGAAGAAATGAATCAACAAGTGGCCTTATTTGAAAAAGAGGGCAAGTTAATAGAGGCTCAACGTATCAAACAGC
GAACAGAGTACGACTTAGCAATGTTAGAAGAAATGGGATTTGTCGGTGGTATTGAAAACTATTCGCGTTGGATGGATGGT
CGCCAAGTTGACGAACCGCCATTTACTTTGCTAGATTTCTTCCCAGATGATTTTCTCGTAGTTGTCGATGAGAGTCATGT
GACCATGCCGCAAATTCGTGGTATGTTCAATGGAGATCGGGCACGTAAAGAAACGTTAGTAAATTATGGTTTTCGTTTGC
CATCGGCACTTGATAATCGACCACTGAAACTGCCTGAGTTTGAACAGCATGTGAACCAAATTATTTATATGTCAGCGACA
CCAGGTGACTATGAATTAGAACGAGTGACGAGTGATCACATTATACAGCAAATCATTCGACCCACTGGGTTATTGGATCC
AGAGGTTGAAGTACGGCCTGTTATGGGACAAATTGATGACTTGGTAGGTGAAATTAATAAACGTGCACAAAAGGATGAAC
GTGTATTTATTACAACCCTAACTAAGCGAATGGCAGAAGATTTAACTGATTATTTAAAGGACATGGGAATCAAGGTAGCC
TATTTACATGCTGATATTAAGACACTTGAACGAACTGAAATTATCCGTGATTTACGTTTAGGTAAATATGATGTGCTGAT
TGGTATTAATTTATTACGTGAAGGTATTGATGTACCTGAAGTGTCCTTAGTTGCTATTTTAGATGCCGATAAGGAAGGCT
TTTTACGTAATCCACGTTCTTTGATTCAGACGATAGGTCGTGCAGCCAGAAACTCGGATGGCCATGTGATTATGTATGCT
GATAAAACGACTAGGTCAATGAAAGAAGCTATGGATGAAACAGCCAGACGACGTGAAATTCAAACACAATATAATGTTGA
ACATGGTATTACACCAACAACAATTAAAAAAGATATTCGCGATTTGATTTCCGTACGTACAGATTCAACCGATAATCAAG
AAGTGATTGATTTGACGCAAGTTGCTTTCAAAGATTTGCCAAAAGATGAACAAATGAGTATTATTGGTAATCTTGAAAAG
CAGATGAAGGCTGCCGCCAAGTCACTAGACTTTGAAGAGGCGGCACAGCTGCGCGATAATGTGATGGAATTAAAAGCCGT
TTTGTAA

Domains

Predicted by InterProScan.

Ultra-violet resistance protein B (UvrB)

(558-600)

UvrB/uvrC motif (UVR)

(635-666)

UvrB interaction domain (UvrB_inter)

(164-254)

Helicase conserved C-terminal domain (Helicase_C)

(442-551)

Type III restriction enzyme, res subunit (ResIII)

(17-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K0DDQ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

69.865

99.85

0.698
  uvrB Streptococcus pneumoniae D39

69.865

99.85

0.698
  uvrB Streptococcus pneumoniae TIGR4

69.715

99.85

0.696

Multiple sequence alignment