Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   C270_RS06295 Genome accession   NC_018673
Coordinates   1281707..1284571 (-) Length   954 a.a.
NCBI ID   WP_014974740.1    Uniprot ID   K0DB88
Organism   Leuconostoc carnosum JB16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1276707..1289571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C270_RS06275 (C270_06080) - 1277322..1278317 (-) 996 WP_014974735.1 D-2-hydroxyacid dehydrogenase -
  C270_RS06280 (C270_06085) clpP 1278592..1279194 (-) 603 WP_014974736.1 ATP-dependent Clp protease proteolytic subunit Regulator
  C270_RS06285 (C270_06090) whiA 1279374..1280318 (-) 945 WP_014974737.1 DNA-binding protein WhiA -
  C270_RS06290 (C270_06095) - 1280318..1281292 (-) 975 WP_014974738.1 gluconeogenesis factor YvcK family protein -
  C270_RS09015 (C270_06100) - 1281532..1281654 (+) 123 WP_014974739.1 putative metal homeostasis protein -
  C270_RS06295 (C270_06105) uvrA 1281707..1284571 (-) 2865 WP_014974740.1 excinuclease ABC subunit UvrA Machinery gene
  C270_RS06300 (C270_06110) uvrB 1284695..1286701 (-) 2007 WP_014974741.1 excinuclease ABC subunit UvrB Machinery gene
  C270_RS06305 (C270_06115) - 1286924..1289083 (-) 2160 WP_014974742.1 LTA synthase family protein -
  C270_RS06310 (C270_06120) - 1289152..1289418 (-) 267 WP_014974743.1 DUF1797 family protein -

Sequence

Protein


Download         Length: 954 a.a.        Molecular weight: 105596.99 Da        Isoelectric Point: 6.4254

>NTDB_id=44678 C270_RS06295 WP_014974740.1 1281707..1284571(-) (uvrA) [Leuconostoc carnosum JB16]
MAKTNIEIRGARVQNLKNIDVDIPKDKLTVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSSYARQFLGQMDKPDVDSIDG
LSPAISIDQKTTSNNPRSTVGTVTEINDYFRLLYARVGRPDDPKDGTKIMITIDQMVEYTLNQLPTGTRLQVFAPIIMGK
RGSHESAFDNMRKQGYIRARVDGTIIELDDQEKISLEKNKPHDIDVMIDRIVLRDDSRSRLFDSMEAAIRLTNGLVQLDI
VTRGDEAAIEPLKFSDHYLGDLRDFRVGRLEPRLFSFNAPLGACEFCQGLGVTREVDIELVIPDSKKTLREGAIAPWNPI
SSNYYPEMLHQFAEQFDINLDIAFESLPKKDQDLILEGSGSKSFHFHYQNDFGGVRDVDIPFEGVIKNIARRFNETNSDF
TRDQMAHYMTELTCQACQGYRLNPAVLSVKINGQHIGEVSEMSVDKELAFFNAITLGEQDTIIAAPIIKEIKDRLGFLES
VGLKYLTLARSARTLSGGESQRIRLATQIGSNLSGVLYVLDEPSIGLHQRDNDMLLSAMQHMRDLGNTLVVVEHDEDTMR
AADYLIDVGPGAGTLGGEIVATGTPDEVANNKSSLTGQYLSGKKFIPVPTQRRKGNGNFVTIKGAKENNLNNITVKFPLG
KFIAVTGVSGSGKSTLVNQILKRALKQKINNNSEKPGRYRAIEGVEKIEQVVDIDQSPIGRTPRSNPATYTGVFDNIRDL
FAQTNEAKMRGYNKGRFSFNTKGGRCENCHGDGVIKIEMNFLPDVYVSCEVCHGTRYNSETLEVTYKGLNISQILDMSAS
EALEFFAPIPKIARKLQTINDVGLGYVKLGQSATTLSGGEAQRMKLASELHRRTNGKTIYILDEPTTGLHVDDISRLLTV
LQRLVDAGNTVVVIEHNLDVIKSADWLIDMGPEGGVGGGNVLVSGIPEKVMNTKNSYTGKYLKQVIERDLARAK

Nucleotide


Download         Length: 2865 bp        

>NTDB_id=44678 C270_RS06295 WP_014974740.1 1281707..1284571(-) (uvrA) [Leuconostoc carnosum JB16]
ATGGCAAAAACAAATATTGAAATACGTGGTGCTCGCGTCCAAAATTTAAAAAATATTGATGTTGATATTCCAAAAGATAA
ATTAACTGTGGTAACTGGACTTTCTGGTTCAGGTAAATCATCTCTAGCTTTCGATACACTGTATGCGGAAGGACAACGAC
GATATGTTGAAAGTTTATCATCATATGCGCGTCAGTTTCTTGGTCAAATGGATAAGCCAGATGTTGATTCAATTGATGGC
TTATCACCAGCTATCTCAATTGATCAGAAAACAACATCTAATAATCCGCGTTCGACAGTAGGAACGGTGACAGAAATTAA
CGATTATTTCCGCCTGCTGTATGCTCGAGTTGGACGACCAGATGACCCTAAAGATGGGACAAAAATTATGATAACCATTG
ATCAAATGGTTGAGTATACCTTGAATCAGTTACCAACTGGTACCCGGTTACAAGTTTTTGCACCAATTATTATGGGTAAG
CGCGGATCACATGAATCAGCATTTGATAATATGCGTAAGCAAGGGTATATTCGTGCTCGAGTGGATGGTACTATTATTGA
ATTAGATGATCAAGAAAAAATATCGTTAGAAAAAAACAAGCCACATGACATTGACGTGATGATTGATCGTATTGTCTTGC
GCGATGATTCACGATCACGTCTTTTTGATTCCATGGAGGCAGCCATACGTTTAACTAATGGGTTAGTGCAACTAGATATT
GTGACACGTGGGGATGAAGCAGCCATTGAACCATTGAAATTCTCTGATCATTATTTAGGTGATTTGAGAGACTTTAGAGT
GGGCCGATTAGAGCCAAGATTGTTTAGTTTCAATGCACCTTTAGGTGCGTGTGAATTTTGTCAAGGACTTGGTGTAACGC
GGGAAGTCGATATTGAATTAGTCATTCCTGATAGCAAAAAAACATTACGAGAAGGGGCAATTGCCCCATGGAACCCTATT
TCATCAAATTATTATCCTGAAATGTTACATCAATTTGCGGAACAGTTTGATATTAATCTAGATATTGCATTTGAATCATT
ACCTAAAAAAGATCAGGATTTAATTCTAGAAGGTTCCGGATCAAAATCATTTCACTTTCATTATCAAAATGATTTTGGTG
GTGTACGTGATGTTGACATACCTTTTGAAGGGGTCATTAAGAATATAGCGCGTCGATTTAATGAAACAAATTCTGACTTT
ACACGGGATCAAATGGCGCATTATATGACGGAATTGACCTGTCAGGCATGCCAAGGATATCGTTTAAATCCGGCAGTACT
CTCTGTGAAAATCAATGGGCAGCACATTGGTGAAGTTTCAGAAATGTCAGTTGATAAAGAATTAGCATTTTTTAATGCGA
TTACATTAGGCGAACAGGACACAATAATTGCCGCACCAATTATTAAAGAAATAAAGGATCGCCTTGGCTTTTTAGAAAGT
GTTGGTTTGAAATATCTGACGCTTGCCCGTTCTGCGCGTACACTATCAGGTGGAGAATCACAGCGTATTCGTTTAGCCAC
ACAAATTGGTTCTAATTTATCAGGCGTTTTGTATGTATTAGATGAACCCTCGATTGGGCTGCACCAACGCGATAACGATA
TGTTGCTCTCAGCGATGCAGCATATGCGTGATTTGGGTAATACACTTGTTGTGGTTGAACATGATGAGGATACTATGCGC
GCTGCAGATTATTTAATTGATGTCGGTCCTGGTGCAGGCACTTTGGGTGGTGAAATTGTTGCCACAGGTACACCAGATGA
AGTAGCTAATAACAAGTCATCATTAACTGGACAGTATTTATCAGGGAAAAAATTTATTCCTGTACCAACTCAGCGGCGTA
AAGGAAATGGTAATTTTGTCACAATTAAAGGTGCTAAAGAAAATAATCTCAATAATATTACAGTGAAATTCCCATTAGGT
AAATTCATAGCCGTTACAGGTGTGTCCGGATCTGGCAAATCAACACTGGTTAATCAGATTTTAAAACGCGCACTAAAACA
AAAAATTAATAATAATTCTGAAAAACCAGGTCGCTATCGAGCCATTGAAGGTGTAGAAAAAATTGAACAGGTCGTTGACA
TTGATCAATCGCCTATTGGACGTACACCTAGATCAAACCCAGCGACTTATACGGGCGTTTTTGATAATATCCGTGACCTG
TTTGCACAAACAAATGAGGCAAAAATGCGTGGCTATAATAAGGGGCGTTTTTCGTTTAATACAAAAGGTGGGCGTTGTGA
AAATTGTCATGGTGATGGTGTGATTAAAATCGAAATGAACTTTTTACCAGATGTCTATGTTTCTTGTGAAGTTTGTCATG
GGACGCGGTACAATTCAGAAACACTAGAAGTGACCTATAAAGGGTTGAATATTTCACAAATATTAGATATGTCAGCTTCC
GAAGCTTTAGAATTTTTTGCTCCTATTCCAAAAATTGCGCGTAAATTACAAACAATTAATGATGTTGGTTTAGGATATGT
CAAATTAGGACAGTCAGCCACAACCTTGTCTGGTGGTGAGGCACAGCGAATGAAATTAGCATCTGAATTGCATCGCCGTA
CAAACGGCAAAACAATTTATATTTTAGACGAACCAACGACGGGGCTGCATGTTGATGATATTTCTCGATTGCTGACAGTA
TTGCAACGTTTGGTTGATGCTGGTAATACAGTTGTTGTGATAGAACATAACCTAGATGTCATTAAATCAGCTGATTGGTT
GATTGATATGGGACCCGAAGGTGGTGTTGGTGGGGGTAATGTTTTAGTTTCTGGAATACCTGAAAAAGTAATGAATACAA
AAAATTCATACACGGGTAAGTATTTAAAGCAGGTTATTGAACGTGACTTAGCACGCGCAAAATAA

Domains

Predicted by InterProScan.

UvrA DNA-binding domain (UvrA_DNA-bind)

(297-406)

UvrA interaction domain (UvrA_inter)

(132-240)

ABC transporter (ABC_tran)

(630-866)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K0DB88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

68.365

98.742

0.675
  uvrA Streptococcus pneumoniae TIGR4

68.365

98.742

0.675
  uvrA Streptococcus pneumoniae D39

68.365

98.742

0.675

Multiple sequence alignment