Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   HPELS_RS06830 Genome accession   NC_017063
Coordinates   1417716..1419029 (-) Length   437 a.a.
NCBI ID   WP_000653588.1    Uniprot ID   -
Organism   Helicobacter pylori ELS37     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1412716..1424029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPELS_RS06800 (HPELS_07030) nadC 1413181..1414002 (-) 822 WP_000404095.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HPELS_RS06805 (HPELS_07035) nadA 1414002..1415012 (-) 1011 WP_001141831.1 quinolinate synthase NadA -
  HPELS_RS06810 (HPELS_07040) - 1415002..1415805 (-) 804 WP_000226230.1 phosphatidylserine decarboxylase -
  HPELS_RS06815 (HPELS_07045) - 1415799..1416305 (-) 507 WP_000953092.1 DUF6115 domain-containing protein -
  HPELS_RS06820 (HPELS_07050) - 1416318..1416812 (-) 495 WP_014419647.1 hypothetical protein -
  HPELS_RS06825 (HPELS_07055) mqnP 1416805..1417689 (-) 885 WP_014419648.1 menaquinone biosynthesis prenyltransferase MqnP -
  HPELS_RS06830 (HPELS_07060) comEC/comE3 1417716..1419029 (-) 1314 WP_000653588.1 ComEC/Rec2 family competence protein Machinery gene
  HPELS_RS06835 (HPELS_07065) - 1419026..1420486 (-) 1461 WP_000349713.1 replicative DNA helicase -
  HPELS_RS06840 (HPELS_07070) - 1420497..1421891 (-) 1395 WP_000953988.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  HPELS_RS06845 (HPELS_07075) crdS 1421894..1423096 (-) 1203 WP_080012219.1 copper-sensing histidine kinase CrdS -
  HPELS_RS06850 (HPELS_07080) crdR 1423062..1423703 (-) 642 WP_001169740.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50306.20 Da        Isoelectric Point: 9.8514

>NTDB_id=44678 HPELS_RS06830 WP_000653588.1 1417716..1419029(-) (comEC/comE3) [Helicobacter pylori ELS37]
MKDKTFQGAFELLSTPKEYLWCGVFLSLLLAINLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKNMI
FYTTIKEPLKDLQYRHAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHLRHSIDNAHSNALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRILSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQIFFKTSSFLRRSFQAISLS
ALVFLNMLIVAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHVVGLGSLLDHILSMPLTIPTISVPSPLWLLGVHLFLT
ILSARFFKVYLSMNVLSMGFFLYCCYQYIIMPSSIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=44678 HPELS_RS06830 WP_000653588.1 1417716..1419029(-) (comEC/comE3) [Helicobacter pylori ELS37]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTTCAACCCCCAAAGAATACTTATGGTGTGGGGTGTTTTTAAG
CCTTTTGTTGGCAATCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTATTACAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTCTTAAAACTCCAATCAAAAAACATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAGATCTCCAATACCGCCATGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTCTTAGAGTCTCTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGAAAACAGGATTTTAAATCGCATT
TGCGCCATTCCATTGATAACGCTCATTCCAACGCTTTAGTGGGCAATTTGTATCGCGCGTTATTCATAGGGGATAGCTTG
AATAAAGACTTAAGAGACAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATCAGCGGGTTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTCCTTTTCTCTCTTTTTTATACTCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTGTTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTATTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGATTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCCATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAATTTTTTTTAAAACCTCTTCTTTTTTAAGGCGATCTTTTCAAGCCATAAGCTTAAGC
GCGCTGGTGTTTTTGAACATGCTCATTGTCGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTTTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGTGGTGGGTTTGGGGTCTTTATTGGATCATA
TTCTAAGCATGCCTTTAACCATCCCTACGATTTCGGTTCCTTCGCCCTTATGGCTTTTAGGGGTGCATTTGTTTTTAACG
ATTCTGAGTGCTCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTGAGCATGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTCAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-385)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

95.652

100

0.957

Multiple sequence alignment