Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HP431_RS12020 Genome accession   NZ_CP053731
Coordinates   2489336..2489872 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain CP55_Sichuan     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2484336..2494872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HP431_RS12000 (HP431_11995) soxR 2486064..2486528 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  HP431_RS12005 (HP431_12000) soxS 2486614..2486937 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  HP431_RS12010 (HP431_12005) pdeC 2486940..2488526 (-) 1587 WP_000019536.1 c-di-GMP phosphodiesterase PdeC -
  HP431_RS12015 (HP431_12010) yjcB 2488956..2489237 (+) 282 WP_001295689.1 YjcB family protein -
  HP431_RS12020 (HP431_12015) ssb 2489336..2489872 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HP431_RS12025 (HP431_12020) uvrA 2490126..2492948 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  HP431_RS12030 (HP431_12025) yjbR 2492983..2493339 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  HP431_RS12035 (HP431_12030) yjbQ 2493343..2493759 (-) 417 WP_000270372.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HP431_RS12040 (HP431_12035) - 2493870..2494097 (-) 228 Protein_2396 HAD family acid phosphatase -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=446723 HP431_RS12020 WP_000168305.1 2489336..2489872(-) (ssb) [Escherichia coli strain CP55_Sichuan]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=446723 HP431_RS12020 WP_000168305.1 2489336..2489872(-) (ssb) [Escherichia coli strain CP55_Sichuan]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCACAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489