Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HP433_RS14835 Genome accession   NZ_CP053723
Coordinates   3040217..3040846 (-) Length   209 a.a.
NCBI ID   WP_106464856.1    Uniprot ID   -
Organism   Escherichia coli strain CP66-6_Sichuan     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3035217..3045846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HP433_RS14820 (HP433_14825) helD 3035459..3037513 (-) 2055 WP_000420533.1 DNA helicase IV -
  HP433_RS14825 (HP433_14830) yccF 3037636..3038082 (+) 447 WP_001261231.1 YccF domain-containing protein -
  HP433_RS14830 (HP433_14835) yccS 3038092..3040254 (+) 2163 WP_000875020.1 YccS family putative transporter -
  HP433_RS14835 (HP433_14840) sxy/tfoX 3040217..3040846 (-) 630 WP_106464856.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  HP433_RS14840 (HP433_14845) sulA 3041065..3041574 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  HP433_RS14845 (HP433_14850) ompA 3041931..3042971 (+) 1041 WP_000750416.1 porin OmpA -
  HP433_RS14850 (HP433_14855) matP 3043047..3043499 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  HP433_RS14855 (HP433_14860) ycbZ 3043685..3045445 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24193.10 Da        Isoelectric Point: 9.0428

>NTDB_id=446688 HP433_RS14835 WP_106464856.1 3040217..3040846(-) (sxy/tfoX) [Escherichia coli strain CP66-6_Sichuan]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLECAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=446688 HP433_RS14835 WP_106464856.1 3040217..3040846(-) (sxy/tfoX) [Escherichia coli strain CP66-6_Sichuan]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAATGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995