Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | HPELS_RS00225 | Genome accession | NC_017063 |
| Coordinates | 39535..40665 (+) | Length | 376 a.a. |
| NCBI ID | WP_001045890.1 | Uniprot ID | - |
| Organism | Helicobacter pylori ELS37 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 34535..45665
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPELS_RS00190 (HPELS_00160) | panD | 34987..35337 (+) | 351 | WP_000142295.1 | aspartate 1-decarboxylase | - |
| HPELS_RS00195 (HPELS_00165) | - | 35348..35641 (+) | 294 | WP_000347919.1 | YbaB/EbfC family nucleoid-associated protein | - |
| HPELS_RS00200 (HPELS_00170) | - | 35641..36636 (+) | 996 | WP_000468496.1 | PDZ domain-containing protein | - |
| HPELS_RS00205 (HPELS_00175) | comB6 | 36644..37699 (+) | 1056 | WP_000786648.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| HPELS_RS00210 (HPELS_00180) | comB7 | 37715..37828 (+) | 114 | WP_001217873.1 | hypothetical protein | Machinery gene |
| HPELS_RS00215 (HPELS_00185) | comB8 | 37825..38568 (+) | 744 | WP_001208413.1 | type IV secretion system protein | Machinery gene |
| HPELS_RS00220 (HPELS_00190) | comB9 | 38568..39542 (+) | 975 | WP_014419477.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| HPELS_RS00225 (HPELS_00195) | comB10 | 39535..40665 (+) | 1131 | WP_001045890.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| HPELS_RS00230 (HPELS_00200) | - | 40736..42148 (+) | 1413 | WP_000694959.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| HPELS_RS00235 (HPELS_00205) | gmd | 42189..43334 (+) | 1146 | WP_000659804.1 | GDP-mannose 4,6-dehydratase | - |
| HPELS_RS00240 (HPELS_00210) | - | 43327..44259 (+) | 933 | WP_001002455.1 | GDP-L-fucose synthase family protein | - |
| HPELS_RS08625 | - | 44287..44501 (-) | 215 | Protein_41 | anthranilate synthase component I | - |
| HPELS_RS08630 (HPELS_00220) | - | 44612..44854 (-) | 243 | WP_000142681.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 376 a.a. Molecular weight: 42037.60 Da Isoelectric Point: 9.7401
>NTDB_id=44666 HPELS_RS00225 WP_001045890.1 39535..40665(+) (comB10) [Helicobacter pylori ELS37]
MNKWLKGAVVFVGGFITITSISLIYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKT
ALKALNSKEMNYSKEETFTSPPMDPKTTLPKKDFSPKQLDLLAARITPFKQSPKNYEENLIFPMDNPNGIDGFTNLKEKD
IATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWSRI
ITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEEVTNFFGDYLLLQLMK
QSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
MNKWLKGAVVFVGGFITITSISLIYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKT
ALKALNSKEMNYSKEETFTSPPMDPKTTLPKKDFSPKQLDLLAARITPFKQSPKNYEENLIFPMDNPNGIDGFTNLKEKD
IATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWSRI
ITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEEVTNFFGDYLLLQLMK
QSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
Nucleotide
Download Length: 1131 bp
>NTDB_id=44666 HPELS_RS00225 WP_001045890.1 39535..40665(+) (comB10) [Helicobacter pylori ELS37]
GTGAATAAGTGGCTTAAAGGGGCGGTTGTTTTTGTGGGGGGTTTTATAACGATTACAAGTATTTCTTTAATCTACCACCA
AAAGCCAAAAGCCCCCTTAAATAACCAACCTAGCCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACAT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACTATTAAAGCCTTACAAGAACAGCTAAAAACC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAATTATTCCAAAGAAGAGACTTTTACTAGCCCTCCCATGGATCCAAAAAC
AACCCTCCCTAAAAAAGATTTTTCTCCAAAACAATTAGATTTACTGGCCGCTCGCATCACCCCTTTCAAACAAAGCCCTA
AAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAATGGCATTGATGGTTTCACTAACCTTAAAGAAAAAGAC
ATCGCCACTAATGAAAACAAGCTTTTACGCACCATTACGGCTGACAAAATGATACCCGCTTTTTTGATCACGCCCATTTC
TAGCCAGATCGCTGGTAAAGTGATTGCGCAAGTGGAAAGCGATATTTTCGCTCACATGGGCAAAGCCGTCTTAATCCCCA
AAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGTCGCATC
ATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGTGGGGGA
ATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCATTACTGCTTTCTACGCTCACTAACGGCTTATTGATTGGGATCA
CTTCGGCTTTAAACAATAGAGGTAATAAAGAAGAGGTGACTAATTTCTTTGGGGATTATCTTTTATTGCAATTGATGAAG
CAAAGCGGCATGGGGATCAATCAAGTCGTGAATCAAATTTTAAGAGACAAGAGCAAGATCGCCCCTATTGTGGTGATTAG
AGAGGGGAGTAGGGTTTTCATTTCGCCCAATACTGACATCTTCTTCCCTATACCCAGAGAAAATGAAGTCATCGCTGAGT
TTTTGAAGTGA
GTGAATAAGTGGCTTAAAGGGGCGGTTGTTTTTGTGGGGGGTTTTATAACGATTACAAGTATTTCTTTAATCTACCACCA
AAAGCCAAAAGCCCCCTTAAATAACCAACCTAGCCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACAT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACTATTAAAGCCTTACAAGAACAGCTAAAAACC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAATTATTCCAAAGAAGAGACTTTTACTAGCCCTCCCATGGATCCAAAAAC
AACCCTCCCTAAAAAAGATTTTTCTCCAAAACAATTAGATTTACTGGCCGCTCGCATCACCCCTTTCAAACAAAGCCCTA
AAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAATGGCATTGATGGTTTCACTAACCTTAAAGAAAAAGAC
ATCGCCACTAATGAAAACAAGCTTTTACGCACCATTACGGCTGACAAAATGATACCCGCTTTTTTGATCACGCCCATTTC
TAGCCAGATCGCTGGTAAAGTGATTGCGCAAGTGGAAAGCGATATTTTCGCTCACATGGGCAAAGCCGTCTTAATCCCCA
AAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGTCGCATC
ATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGTGGGGGA
ATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCATTACTGCTTTCTACGCTCACTAACGGCTTATTGATTGGGATCA
CTTCGGCTTTAAACAATAGAGGTAATAAAGAAGAGGTGACTAATTTCTTTGGGGATTATCTTTTATTGCAATTGATGAAG
CAAAGCGGCATGGGGATCAATCAAGTCGTGAATCAAATTTTAAGAGACAAGAGCAAGATCGCCCCTATTGTGGTGATTAG
AGAGGGGAGTAGGGTTTTCATTTCGCCCAATACTGACATCTTCTTCCCTATACCCAGAGAAAATGAAGTCATCGCTGAGT
TTTTGAAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
95.213 |
100 |
0.952 |