Detailed information NTG0044665

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: HPELS_RS00220
• Genome accession: NC_017063
• Coordinates: 38568..39542 (+)
• Length: 324 a.a.
• NCBI ID: WP_014419477.1
• Uniprot ID: -
• Organism: Helicobacter pylori ELS37
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 33568..44542

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPELS_RS00190 (HPELS_00160)	panD	34987..35337 (+)	351	WP_000142295.1	aspartate 1-decarboxylase	-
HPELS_RS00195 (HPELS_00165)	-	35348..35641 (+)	294	WP_000347919.1	YbaB/EbfC family nucleoid-associated protein	-
HPELS_RS00200 (HPELS_00170)	-	35641..36636 (+)	996	WP_000468496.1	PDZ domain-containing protein	-
HPELS_RS00205 (HPELS_00175)	comB6	36644..37699 (+)	1056	WP_000786648.1	P-type conjugative transfer protein TrbL	Machinery gene
HPELS_RS00210 (HPELS_00180)	comB7	37715..37828 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
HPELS_RS00215 (HPELS_00185)	comB8	37825..38568 (+)	744	WP_001208413.1	type IV secretion system protein	Machinery gene
HPELS_RS00220 (HPELS_00190)	comB9	38568..39542 (+)	975	WP_014419477.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HPELS_RS00225 (HPELS_00195)	comB10	39535..40665 (+)	1131	WP_001045890.1	DNA type IV secretion system protein ComB10	Machinery gene
HPELS_RS00230 (HPELS_00200)	-	40736..42148 (+)	1413	WP_000694959.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
HPELS_RS00235 (HPELS_00205)	gmd	42189..43334 (+)	1146	WP_000659804.1	GDP-mannose 4,6-dehydratase	-
HPELS_RS00240 (HPELS_00210)	-	43327..44259 (+)	933	WP_001002455.1	GDP-L-fucose synthase family protein	-
HPELS_RS08625	-	44287..44501 (-)	215	Protein_41	anthranilate synthase component I	-

Sequence

Protein

• Length: 324 a.a.
• Molecular weight: 37482.22 Da
• Isoelectric Point: 9.5535

>NTDB_id=44665 HPELS_RS00220 WP_014419477.1 38568..39542(+) (comB9) [Helicobacter pylori ELS37]
MRKVLYALMGFLLTFSVLKADDFLEEANETAPAHLNHPMQDLNAIQGSFFDKNRSKMSNTLNINYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDSEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFLKPQKENKENTLENAPTNNKPLKEEKEETKEKEEETIIIGDNTNAMKIIKKDIQKGYKALKSSQRKWYCLWACS
KKSKLSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFIKR
SKGE

Nucleotide

• Length: 975 bp

>NTDB_id=44665 HPELS_RS00220 WP_014419477.1 38568..39542(+) (comB9) [Helicobacter pylori ELS37]
ATGCGTAAGGTTTTATACGCTCTCATGGGCTTTTTGTTGACTTTTAGCGTTTTAAAAGCCGATGATTTTTTAGAAGAAGC
GAACGAAACAGCACCGGCGCATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCCAAAATGTCCAACACTTTGAACATTAATTATTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACTTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
CAACGATCGTATTTTACTCATCAAACCCTTACAAATCGGCGTGGATTCTAATATCAGCGTGATTGATAGTGAGGGCAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTGCAGGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTTTGAAGCCCCAAAAAGAAAATAAAGAAAATACCCTTGAAAACGCTCCCACAAACAACAAACC
CTTAAAAGAAGAAAAAGAAGAAACTAAAGAAAAAGAAGAAGAGACTATAATTATTGGCGATAACACCAACGCGATGAAAA
TTATTAAAAAAGACATCCAAAAAGGCTATAAGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTATGGGCTTGTTCT
AAAAAATCCAAACTCTCCTTAATGCCTGAAGAAATTTTTAACGACAAACAATTCACTTATTTCAAATTTGACAAAAAATT
AGCGCTCTCTAAATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCGATT
ACATTATCGCTGAAGACGTTTCGGCTAAATGGACTTTAAGGCTGGGTAAGGACTATCTGTGCATCCGTTTTATCAAAAGG
AGCAAAGGTGAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-315)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	93.558	100	0.941