Detailed information NTG0044662

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: HPELS_RS00205
• Genome accession: NC_017063
• Coordinates: 36644..37699 (+)
• Length: 351 a.a.
• NCBI ID: WP_000786648.1
• Uniprot ID: -
• Organism: Helicobacter pylori ELS37
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 31644..42699

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPELS_RS00175 (HPELS_00145)	-	32069..32482 (+)	414	WP_001023008.1	universal stress protein	-
HPELS_RS00180 (HPELS_00150)	-	32497..32772 (+)	276	WP_000784903.1	ATP-dependent Clp protease adaptor ClpS	-
HPELS_RS00185 (HPELS_00155)	-	32772..34997 (+)	2226	WP_001051478.1	AAA family ATPase	-
HPELS_RS00190 (HPELS_00160)	panD	34987..35337 (+)	351	WP_000142295.1	aspartate 1-decarboxylase	-
HPELS_RS00195 (HPELS_00165)	-	35348..35641 (+)	294	WP_000347919.1	YbaB/EbfC family nucleoid-associated protein	-
HPELS_RS00200 (HPELS_00170)	-	35641..36636 (+)	996	WP_000468496.1	PDZ domain-containing protein	-
HPELS_RS00205 (HPELS_00175)	comB6	36644..37699 (+)	1056	WP_000786648.1	P-type conjugative transfer protein TrbL	Machinery gene
HPELS_RS00210 (HPELS_00180)	comB7	37715..37828 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
HPELS_RS00215 (HPELS_00185)	comB8	37825..38568 (+)	744	WP_001208413.1	type IV secretion system protein	Machinery gene
HPELS_RS00220 (HPELS_00190)	comB9	38568..39542 (+)	975	WP_014419477.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HPELS_RS00225 (HPELS_00195)	comB10	39535..40665 (+)	1131	WP_001045890.1	DNA type IV secretion system protein ComB10	Machinery gene
HPELS_RS00230 (HPELS_00200)	-	40736..42148 (+)	1413	WP_000694959.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39753.70 Da
• Isoelectric Point: 9.0413

>NTDB_id=44662 HPELS_RS00205 WP_000786648.1 36644..37699(+) (comB6) [Helicobacter pylori ELS37]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSAVALAFMLFAYRSLKEQNFFSVSALLEALWFVGFFALFNY
ALKNPSRFYELFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSVLQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVICLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALTSLQYITTSPAPSSVSTSTSGSISKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=44662 HPELS_RS00205 WP_000786648.1 36644..37699(+) (comB6) [Helicobacter pylori ELS37]
ATGAAAAATGACGCTTATGAAATCATTCTTTCTTGGTTTATCACGCCTCTTACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTCCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGCGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGTTAGCGCGCTTTTAGAAGCGTTATGGTTTGTGGGGTTTTTTGCGCTGTTTAACTAC
GCTTTGAAAAACCCTTCGCGCTTTTATGAATTGTTTCAAAACGCTATCTTTATTGCGCCTAACATGATCACTCAAAGCCT
TTCTCAAAGCTTGAGTAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTCAATCATGGTTTTTATGCCCTTAGTT
TCATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCGTTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTGGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGATTTTT
CAAAACCTGGAGGAGCGTTGTGGTTATATGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTTTCAGTTACTAAGGCTTTGATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGTGCCAACCTCAGCCAAAACGCTCTTACTTCCTTACAATATATCA
CGACCTCGCCCGCTCCCTCTAGCGTTTCTACTTCTACAAGCGGTAGCATTTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATTCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	95.442	100	0.954