Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HP410_RS00110 Genome accession   NZ_CP053719
Coordinates   11948..12487 (+) Length   179 a.a.
NCBI ID   WP_142836750.1    Uniprot ID   -
Organism   Proteus mirabilis strain MPE0346     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 455..16815 11948..12487 within 0


Gene organization within MGE regions


Location: 455..16815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HP410_RS00010 - 455..679 (-) 225 WP_121909391.1 DUF3310 domain-containing protein -
  HP410_RS19850 - 793..1021 (-) 229 Protein_3 recombination protein NinB -
  HP410_RS00020 - 1532..1825 (-) 294 WP_063073731.1 hypothetical protein -
  HP410_RS00025 - 2048..2215 (-) 168 WP_152964332.1 hypothetical protein -
  HP410_RS00030 - 2234..3597 (-) 1364 Protein_6 replicative DNA helicase -
  HP410_RS00035 - 3601..4433 (-) 833 Protein_7 replication protein -
  HP410_RS00040 - 4485..5111 (-) 627 WP_367890053.1 phage antirepressor KilAC domain-containing protein -
  HP410_RS00045 - 5133..5465 (-) 333 WP_063073726.1 CII family transcriptional regulator -
  HP410_RS00050 - 5601..5786 (-) 186 WP_036895075.1 Cro/CI family transcriptional regulator -
  HP410_RS00055 - 5882..6592 (+) 711 WP_064506002.1 LexA family transcriptional regulator -
  HP410_RS20120 - 6598..6732 (-) 135 WP_259694947.1 hypothetical protein -
  HP410_RS00060 - 6746..7156 (+) 411 WP_175246620.1 hypothetical protein -
  HP410_RS00065 - 7532..7825 (+) 294 WP_175246621.1 hypothetical protein -
  HP410_RS00070 - 7836..8072 (+) 237 WP_049220845.1 hypothetical protein -
  HP410_RS00075 - 8044..8325 (-) 282 WP_071233777.1 hypothetical protein -
  HP410_RS00080 - 8492..8767 (+) 276 WP_175246622.1 hypothetical protein -
  HP410_RS00085 - 8885..9826 (+) 942 WP_175246623.1 cell envelope biogenesis protein TolA -
  HP410_RS00090 - 10047..10322 (+) 276 WP_063108488.1 hypothetical protein -
  HP410_RS00095 - 10319..10573 (+) 255 WP_063693267.1 hypothetical protein -
  HP410_RS00100 - 10570..11394 (+) 825 WP_175246624.1 PD-(D/E)XK nuclease-like domain-containing protein -
  HP410_RS00105 - 11394..11948 (+) 555 WP_036976946.1 hypothetical protein -
  HP410_RS00110 ssb 11948..12487 (+) 540 WP_142836750.1 single-stranded DNA-binding protein Machinery gene
  HP410_RS00115 - 12503..12664 (+) 162 WP_153274246.1 hypothetical protein -
  HP410_RS00120 - 12706..12924 (+) 219 WP_142836744.1 hypothetical protein -
  HP410_RS00125 - 12960..13253 (+) 294 WP_175246625.1 cyclic-phosphate processing receiver domain-containing protein -
  HP410_RS00130 - 13246..13437 (+) 192 WP_175246626.1 hypothetical protein -
  HP410_RS00135 - 13608..13976 (+) 369 WP_063073714.1 hypothetical protein -
  HP410_RS00140 - 14133..14321 (+) 189 WP_175246627.1 hypothetical protein -
  HP410_RS00145 - 14314..14670 (+) 357 WP_096043071.1 phage protein NinX family protein -
  HP410_RS00150 - 14657..15258 (+) 602 Protein_31 MT-A70 family methyltransferase -
  HP410_RS00155 - 15432..15662 (+) 231 WP_236546511.1 AlpA family transcriptional regulator -
  HP410_RS00160 - 15640..16815 (-) 1176 WP_102086786.1 site-specific integrase -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19733.11 Da        Isoelectric Point: 7.2415

>NTDB_id=446633 HP410_RS00110 WP_142836750.1 11948..12487(+) (ssb) [Proteus mirabilis strain MPE0346]
MASKGVNKCILIGHLGQDPEIRYMPSGGAVANLTLATSESWRDKQTGEMKDRVEWHRVCIFGKLAEIAGEYLRKGSQVYI
EGSLQTRKWQDQSGQDRYTTEVVVNIGGTMQMLGGNGGNQAGSQKPQQNQGWGQPQQPQAPKQASSNQTPQSEPPQDWDD
PIPFAPIGLPYPRHAIYVI

Nucleotide


Download         Length: 540 bp        

>NTDB_id=446633 HP410_RS00110 WP_142836750.1 11948..12487(+) (ssb) [Proteus mirabilis strain MPE0346]
ATGGCAAGTAAAGGCGTGAATAAATGTATTCTCATTGGTCACTTGGGGCAGGATCCAGAAATCCGTTATATGCCATCAGG
TGGCGCAGTCGCTAATCTCACACTAGCCACATCGGAATCGTGGCGTGATAAGCAGACTGGTGAAATGAAGGATCGGGTTG
AGTGGCATCGAGTGTGCATCTTCGGAAAATTAGCCGAAATTGCAGGTGAATATCTGAGAAAAGGAAGTCAGGTATATATC
GAGGGCTCACTGCAAACCAGAAAATGGCAAGACCAAAGCGGTCAAGACCGATACACAACGGAAGTAGTGGTCAATATTGG
TGGAACAATGCAGATGCTAGGCGGTAACGGTGGTAATCAGGCAGGAAGCCAGAAGCCACAGCAAAACCAAGGATGGGGTC
AGCCTCAGCAACCGCAAGCGCCAAAACAAGCATCGAGTAATCAAACACCACAAAGTGAGCCACCTCAAGATTGGGATGAT
CCTATACCTTTCGCCCCTATCGGACTCCCCTACCCACGACACGCTATTTATGTGATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

66.667

98.883

0.659
  ssb Glaesserella parasuis strain SC1401

50.829

100

0.514
  ssb Neisseria meningitidis MC58

43.182

98.324

0.425
  ssb Neisseria gonorrhoeae MS11

42.614

98.324

0.419