Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HN018_RS10250 Genome accession   NZ_CP053708
Coordinates   2211338..2211913 (+) Length   191 a.a.
NCBI ID   WP_171833950.1    Uniprot ID   A0A6M8HPV5
Organism   Lichenicola cladoniae strain PAMC 26569     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2206338..2216913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HN018_RS10230 (HN018_10235) - 2206521..2206958 (+) 438 WP_171833954.1 hypothetical protein -
  HN018_RS10235 (HN018_10240) - 2206977..2207387 (+) 411 WP_171833953.1 LytTR family DNA-binding domain-containing protein -
  HN018_RS10240 (HN018_10245) - 2207342..2208220 (-) 879 WP_171833952.1 NAD(P)-dependent oxidoreductase -
  HN018_RS10245 (HN018_10250) uvrA 2208241..2211171 (-) 2931 WP_171833951.1 excinuclease ABC subunit UvrA -
  HN018_RS10250 (HN018_10255) ssb 2211338..2211913 (+) 576 WP_171833950.1 single-stranded DNA-binding protein Machinery gene
  HN018_RS10255 (HN018_10260) gyrA 2212222..2215065 (+) 2844 WP_171834130.1 DNA gyrase subunit A -
  HN018_RS10260 (HN018_10265) coaD 2215058..2215564 (+) 507 WP_171833949.1 pantetheine-phosphate adenylyltransferase -
  HN018_RS10265 (HN018_10270) - 2215599..2216102 (+) 504 WP_171833948.1 peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 19579.37 Da        Isoelectric Point: 5.9821

>NTDB_id=446534 HN018_RS10250 WP_171833950.1 2211338..2211913(+) (ssb) [Lichenicola cladoniae strain PAMC 26569]
MAGSVNKVILVGNLGKDPEVRNAQNGTKIVTFTLATSETWNDKASGERKEQTEWHRVVVFNERLADVAERFLKKGKKVYV
EGALQTRKWTDQSGVEKYTTEVVLSRFRGDLTMLDSGRGDESGGGDSGYGGGGGGGGGSSYGGGSRPASGPRGGRSPGGT
PAPAGGGGQGGGGAGGGWEPSGNDLDDEIPF

Nucleotide


Download         Length: 576 bp        

>NTDB_id=446534 HN018_RS10250 WP_171833950.1 2211338..2211913(+) (ssb) [Lichenicola cladoniae strain PAMC 26569]
ATGGCGGGCAGCGTCAACAAGGTGATCCTCGTTGGGAATCTCGGGAAAGATCCCGAGGTCCGGAACGCACAGAACGGCAC
CAAGATCGTGACCTTCACGCTGGCGACCAGCGAGACGTGGAACGACAAGGCATCCGGCGAACGCAAGGAACAGACCGAGT
GGCACCGTGTCGTGGTGTTCAACGAGCGCCTGGCCGACGTTGCGGAACGGTTCCTGAAAAAGGGCAAGAAGGTCTACGTC
GAGGGTGCGTTGCAGACCCGGAAATGGACCGACCAGTCCGGCGTCGAGAAATACACCACCGAAGTCGTGCTGAGCCGGTT
CCGTGGCGACCTGACGATGCTCGATTCGGGGCGGGGCGACGAAAGCGGCGGTGGCGATAGCGGTTATGGTGGCGGCGGCG
GTGGTGGCGGCGGAAGCAGCTATGGCGGCGGTTCGCGGCCGGCGAGCGGTCCGCGCGGTGGCCGAAGCCCGGGCGGCACG
CCGGCTCCGGCCGGTGGCGGTGGCCAGGGCGGCGGCGGTGCCGGCGGCGGTTGGGAGCCGTCCGGCAACGACCTGGACGA
CGAAATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6M8HPV5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

46

100

0.482
  ssb Vibrio cholerae strain A1552

45.503

98.953

0.45
  ssb Neisseria meningitidis MC58

39.378

100

0.398
  ssb Neisseria gonorrhoeae MS11

38.974

100

0.398