Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HPT10_RS03680 Genome accession   NZ_CP053705
Coordinates   758828..759325 (+) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain PAC6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 753828..764325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPT10_RS03665 (HPT10_03665) bfr 753836..754300 (+) 465 WP_003093668.1 bacterioferritin -
  HPT10_RS03670 (HPT10_03670) uvrA 754372..757209 (-) 2838 WP_003110572.1 excinuclease ABC subunit UvrA -
  HPT10_RS03675 (HPT10_03675) - 757423..758811 (+) 1389 WP_009316331.1 MFS transporter -
  HPT10_RS03680 (HPT10_03680) ssb 758828..759325 (+) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  HPT10_RS03685 (HPT10_03685) pchA 759412..760842 (-) 1431 WP_216665735.1 isochorismate synthase -
  HPT10_RS03690 (HPT10_03690) pchB 760839..761144 (-) 306 WP_003106950.1 isochorismate lyase PchB -
  HPT10_RS03695 (HPT10_03695) pchC 761144..761899 (-) 756 WP_003114687.1 pyochelin biosynthesis editing thioesterase PchC -
  HPT10_RS03700 (HPT10_03700) pchD 761896..763539 (-) 1644 WP_009316327.1 pyochelin biosynthesis salicyl-AMP ligase PchD -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=446463 HPT10_RS03680 WP_003114685.1 758828..759325(+) (ssb) [Pseudomonas aeruginosa strain PAC6]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=446463 HPT10_RS03680 WP_003114685.1 758828..759325(+) (ssb) [Pseudomonas aeruginosa strain PAC6]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGACTCGCAGCGTGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAGCAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAGCCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515