Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HNE05_RS02665 Genome accession   NZ_CP053697
Coordinates   597188..597694 (+) Length   168 a.a.
NCBI ID   WP_180889170.1    Uniprot ID   -
Organism   Aquipseudomonas campi strain S1-A32-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 592188..602694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HNE05_RS02650 (HNE05_00260) rplQ 592256..592642 (+) 387 WP_160347644.1 50S ribosomal protein L17 -
  HNE05_RS02655 (HNE05_00265) uvrA 592815..595649 (-) 2835 WP_173203062.1 excinuclease ABC subunit UvrA -
  HNE05_RS02660 (HNE05_00270) - 595783..597177 (+) 1395 WP_173203064.1 MFS transporter -
  HNE05_RS02665 (HNE05_00275) ssb 597188..597694 (+) 507 WP_180889170.1 single-stranded DNA-binding protein Machinery gene
  HNE05_RS02670 (HNE05_00280) - 597955..599145 (+) 1191 WP_173203068.1 tyrosine-type recombinase/integrase -
  HNE05_RS02675 (HNE05_00285) - 599132..600736 (+) 1605 WP_173203070.1 site-specific integrase -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18619.55 Da        Isoelectric Point: 5.0012

>NTDB_id=446378 HNE05_RS02665 WP_180889170.1 597188..597694(+) (ssb) [Aquipseudomonas campi strain S1-A32-2]
MARGVNKVILIGNVGGDPETRYLPNGNAVTNITLATTDSWKDKQTGQQQDRTEWHRIVFFGKLAEIAGEYLRKGGQCYIE
GRLQTREWEKDGVKRYTTEIVVDMNGTLQLLGGRGGNSEGGGEYAPRQQQSRPAPQQSAPQQRPAPQPAAQQQPAPDYDS
FDDDDIPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=446378 HNE05_RS02665 WP_180889170.1 597188..597694(+) (ssb) [Aquipseudomonas campi strain S1-A32-2]
ATGGCCCGTGGGGTAAACAAAGTCATTCTGATCGGTAACGTCGGCGGCGATCCGGAAACCCGTTATCTGCCCAATGGCAA
CGCGGTGACCAACATCACCCTGGCCACCACCGACAGCTGGAAAGACAAGCAGACCGGTCAGCAGCAGGACCGCACCGAAT
GGCACCGCATCGTGTTCTTCGGCAAGCTCGCCGAGATCGCCGGTGAATACCTGCGCAAGGGCGGCCAGTGCTACATCGAA
GGTCGTCTGCAAACCCGCGAGTGGGAGAAGGACGGCGTCAAGCGCTACACCACCGAGATCGTGGTCGACATGAACGGCAC
CCTGCAGCTGCTCGGCGGCCGTGGTGGCAACAGCGAAGGCGGCGGTGAATACGCCCCGCGTCAGCAGCAGTCGCGTCCGG
CCCCGCAGCAGTCCGCGCCGCAGCAACGCCCAGCGCCACAGCCCGCCGCTCAGCAGCAACCGGCTCCGGACTACGACAGC
TTCGACGACGACGACATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.714

100

0.601
  ssb Glaesserella parasuis strain SC1401

46.739

100

0.512
  ssb Neisseria gonorrhoeae MS11

47.222

100

0.506
  ssb Neisseria meningitidis MC58

46.667

100

0.5