NTDB

Overview

Name	ysxA/radC	Type	Machinery gene
Locus tag	I5044_RS07805	Genome accession	NZ_CP065354
Coordinates	1647719..1648405 (-)	Length	228 a.a.
NCBI ID	WP_000692876.1	Uniprot ID	-
Organism	Staphylococcus aureus strain JW_comp_novo
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1642719..1653405

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I5044_RS07760 (I5044_07760)	rpmA	1643364..1643648 (-)	285	WP_000916187.1	50S ribosomal protein L27	-
I5044_RS07765 (I5044_07765)	-	1643660..1643980 (-)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
I5044_RS07770 (I5044_07770)	rplU	1643986..1644294 (-)	309	WP_000457386.1	50S ribosomal protein L21	-
I5044_RS07775 (I5044_07775)	mreD	1644656..1645186 (-)	531	WP_001259925.1	rod shape-determining protein MreD	-
I5044_RS07780 (I5044_07780)	mreC	1645186..1646028 (-)	843	WP_000911041.1	rod shape-determining protein MreC	-
I5044_RS07785 (I5044_07785)	-	1646227..1646346 (-)	120	WP_000840603.1	hypothetical protein	-
I5044_RS07790 (I5044_07790)	-	1646420..1646893 (-)	474	WP_196957546.1	DUF4930 family protein	-
I5044_RS07795 (I5044_07795)	-	1647053..1647250 (+)	198	WP_000025835.1	hypothetical protein	-
I5044_RS07800 (I5044_07800)	-	1647367..1647651 (-)	285	WP_000171863.1	hypothetical protein	-
I5044_RS07805 (I5044_07805)	ysxA/radC	1647719..1648405 (-)	687	WP_000692876.1	RadC family protein	Machinery gene
I5044_RS07810 (I5044_07810)	-	1648402..1649109 (-)	708	WP_196957547.1	prepilin peptidase	-
I5044_RS07815 (I5044_07815)	-	1649377..1650648 (-)	1272	WP_001108341.1	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	-
I5044_RS07820 (I5044_07820)	-	1650661..1653291 (-)	2631	WP_000425345.1	valine--tRNA ligase	-

Sequence

Protein

Download Length: 228 a.a. Molecular weight: 25297.21 Da Isoelectric Point: 6.7572

                                >NTDB_id=446285 I5044_RS07805 WP_000692876.1 1647719..1648405(-) (ysxA/radC) [Staphylococcus aureus strain JW_comp_novo]

MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIQVKGIGLQKAI

TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKESCVFKGTLNSSIVHPREIFSI

AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide

Download Length: 687 bp

                                >NTDB_id=446285 I5044_RS07805 WP_000692876.1 1647719..1648405(-) (ysxA/radC) [Staphylococcus aureus strain JW_comp_novo]

TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC

AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGTATAGACATTAGTAATGAACTGCTTAAATCTG

CTTCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATACAAGTTAAAGGGATTGGATTACAAAAAGCAATT

ACATTAAAAGCAGCATTTGAGTTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG

TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA

ATGTAGTGATTAAAGAAAGCTGTGTTTTTAAAGGTACATTAAATAGTTCAATTGTACATCCACGCGAAATTTTTAGTATT

GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT

CATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGGATAGATTTATTGGATCATATTATAATCGGTGATAATA

GATTTACGAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-222)

UPF0758 N-terminal (UPF0758_N)

(3-80)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	52.679	98.246	0.518
radC	Streptococcus pneumoniae TIGR4	41.038	92.982	0.382
radC	Streptococcus gordonii str. Challis substr. CH1	39.908	95.614	0.382
radC	Streptococcus pneumoniae R6	40.566	92.982	0.377
radC	Streptococcus pneumoniae D39	40.566	92.982	0.377

Detailed information NTG0446285