Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HO274_RS09195 Genome accession   NZ_CP053676
Coordinates   1881244..1881729 (+) Length   161 a.a.
NCBI ID   WP_273118981.1    Uniprot ID   -
Organism   MAG: Ferrovum myxofaciens isolate S2.4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1876244..1886729
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HO274_RS09175 (HO274_09140) - 1876267..1876581 (-) 315 WP_031595604.1 DUF190 domain-containing protein -
  HO274_RS09180 (HO274_09145) crcB 1876608..1877003 (-) 396 WP_273118975.1 fluoride efflux transporter CrcB -
  HO274_RS09185 (HO274_09150) uvrA 1877081..1879921 (-) 2841 WP_273118977.1 excinuclease ABC subunit UvrA -
  HO274_RS09190 (HO274_09155) - 1880068..1881228 (+) 1161 WP_160171513.1 MFS transporter -
  HO274_RS09195 (HO274_09160) ssb 1881244..1881729 (+) 486 WP_273118981.1 single-stranded DNA-binding protein Machinery gene
  HO274_RS09200 (HO274_09165) - 1881726..1883360 (-) 1635 WP_273118984.1 tetratricopeptide repeat protein -
  HO274_RS09205 (HO274_09170) aspS 1883361..1885124 (-) 1764 WP_273118987.1 aspartate--tRNA ligase -
  HO274_RS09210 (HO274_09175) - 1885167..1885778 (-) 612 WP_273118990.1 DUF502 domain-containing protein -
  HO274_RS09215 (HO274_09180) - 1885775..1886038 (-) 264 WP_031595596.1 FmdB family zinc ribbon protein -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17136.99 Da        Isoelectric Point: 5.9328

>NTDB_id=446253 HO274_RS09195 WP_273118981.1 1881244..1881729(+) (ssb) [MAG: Ferrovum myxofaciens isolate S2.4]
MASVNKVILVGNLGRDPEVRYMPDGSAIANISVATTDTWKDKAGTKQEKTEWHRVSFFGKTAEIVAQYLKKGSQVYLEGR
IQTRKWQDKETGQDRFSTEIVGDRMQMLGGRAGAGGDVDFPSQDSGGEGGFGGQGSAAGKPGGKGGTNVGGFDNFPDDVP
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=446253 HO274_RS09195 WP_273118981.1 1881244..1881729(+) (ssb) [MAG: Ferrovum myxofaciens isolate S2.4]
ATGGCATCGGTCAATAAAGTGATTTTGGTAGGAAATTTGGGGCGCGATCCAGAGGTTCGTTACATGCCCGATGGCAGCGC
CATTGCCAACATCAGTGTGGCTACGACGGATACCTGGAAAGATAAAGCCGGTACCAAGCAGGAAAAGACCGAGTGGCATC
GCGTGTCTTTCTTCGGAAAAACGGCTGAAATTGTGGCTCAATACCTGAAGAAAGGCAGTCAGGTTTATCTGGAAGGGCGT
ATTCAGACGCGTAAATGGCAGGACAAGGAAACCGGGCAGGACCGCTTTTCCACGGAAATCGTGGGCGACCGCATGCAAAT
GTTGGGCGGACGCGCGGGTGCCGGGGGTGATGTGGACTTCCCATCGCAGGATTCCGGCGGTGAGGGAGGCTTTGGAGGGC
AGGGCTCTGCTGCAGGAAAGCCCGGAGGGAAAGGAGGTACGAATGTCGGCGGGTTTGATAACTTCCCGGATGACGTTCCT
TTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

46.703

100

0.528
  ssb Vibrio cholerae strain A1552

65.854

76.398

0.503
  ssb Neisseria meningitidis MC58

47.205

100

0.472
  ssb Neisseria gonorrhoeae MS11

46.584

100

0.466