Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HO273_RS09590 Genome accession   NZ_CP053675
Coordinates   1946033..1946518 (+) Length   161 a.a.
NCBI ID   WP_031595600.1    Uniprot ID   A0A859A9P4
Organism   MAG: Ferrovum myxofaciens isolate MI1A     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1941033..1951518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HO273_RS09570 (HO273_09105) - 1941056..1941370 (-) 315 WP_062187377.1 DUF190 domain-containing protein -
  HO273_RS09575 (HO273_09110) crcB 1941397..1941792 (-) 396 WP_031595603.1 fluoride efflux transporter CrcB -
  HO273_RS09580 (HO273_09115) uvrA 1941870..1944710 (-) 2841 WP_062187379.1 excinuclease ABC subunit UvrA -
  HO273_RS09585 (HO273_09120) - 1944839..1946017 (+) 1179 WP_035416979.1 MFS transporter -
  HO273_RS09590 (HO273_09125) ssb 1946033..1946518 (+) 486 WP_031595600.1 single-stranded DNA-binding protein Machinery gene
  HO273_RS09595 (HO273_09130) - 1946515..1948149 (-) 1635 WP_062187383.1 tetratricopeptide repeat protein -
  HO273_RS09600 (HO273_09135) aspS 1948150..1949913 (-) 1764 WP_031595598.1 aspartate--tRNA ligase -
  HO273_RS09605 (HO273_09140) - 1949956..1950567 (-) 612 WP_062187384.1 DUF502 domain-containing protein -
  HO273_RS09610 (HO273_09145) - 1950564..1950827 (-) 264 WP_031595596.1 FmdB family zinc ribbon protein -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17152.99 Da        Isoelectric Point: 5.9328

>NTDB_id=446239 HO273_RS09590 WP_031595600.1 1946033..1946518(+) (ssb) [MAG: Ferrovum myxofaciens isolate MI1A]
MASVNKVILVGNLGRDPEVRYMPDGSAIANISVATTDTWKDKAGTKQEKTEWHRVSFFGKTAEIVAQYLKKGSQVYLEGR
IQTRKWQDKETGQDRFSTEIVGDRMQMLGGRAGAGGDVDFPSQDSGGEGGFGGQGSASGKPGGKGGTNVGGFDNFPDDVP
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=446239 HO273_RS09590 WP_031595600.1 1946033..1946518(+) (ssb) [MAG: Ferrovum myxofaciens isolate MI1A]
ATGGCATCGGTCAATAAAGTGATTTTGGTAGGAAATTTGGGGCGCGATCCAGAGGTTCGTTACATGCCCGATGGCAGCGC
CATTGCCAACATCAGTGTGGCTACGACGGATACCTGGAAAGATAAAGCCGGTACCAAGCAGGAAAAGACCGAGTGGCATC
GCGTGTCTTTCTTCGGAAAAACGGCTGAAATTGTGGCTCAATACCTGAAGAAAGGCAGTCAGGTTTATCTGGAAGGGCGG
ATTCAGACGCGTAAATGGCAGGACAAGGAAACCGGGCAGGACCGCTTTTCCACGGAAATCGTGGGCGACCGCATGCAAAT
GTTGGGCGGACGCGCGGGTGCCGGGGGTGATGTGGACTTCCCATCGCAGGATTCCGGCGGTGAGGGAGGCTTTGGAGGGC
AGGGCTCTGCTTCAGGAAAGCCCGGAGGGAAAGGAGGTACGAATGTCGGCGGGTTTGATAACTTCCCGGATGACGTTCCT
TTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.934

100

0.584
  ssb Glaesserella parasuis strain SC1401

46.703

100

0.528
  ssb Neisseria meningitidis MC58

47.205

100

0.472
  ssb Neisseria gonorrhoeae MS11

46.584

100

0.466