Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   HPK20_RS05410 Genome accession   NZ_CP053664
Coordinates   1176760..1177353 (+) Length   197 a.a.
NCBI ID   WP_024374700.1    Uniprot ID   -
Organism   Vibrio fluvialis strain A8     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1171760..1182353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPK20_RS05390 (HPK20_05390) panP 1172100..1173743 (-) 1644 WP_171933505.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -
  HPK20_RS05395 (HPK20_05395) - 1173883..1174395 (-) 513 WP_020327716.1 hypothetical protein -
  HPK20_RS05400 (HPK20_05400) - 1174542..1175447 (-) 906 WP_020327715.1 lysine exporter LysO family protein -
  HPK20_RS05405 (HPK20_05405) - 1175467..1176387 (-) 921 WP_075988689.1 HDOD domain-containing protein -
  HPK20_RS05410 (HPK20_05410) tfoX 1176760..1177353 (+) 594 WP_024374700.1 TfoX/Sxy family DNA transformation protein Regulator
  HPK20_RS05415 (HPK20_05415) - 1177449..1177997 (-) 549 WP_171933506.1 hypothetical protein -
  HPK20_RS05420 (HPK20_05420) - 1178223..1178720 (-) 498 WP_020327711.1 response regulator -
  HPK20_RS05425 (HPK20_05425) - 1178743..1180674 (-) 1932 WP_024373560.1 ATP-binding protein -
  HPK20_RS05430 (HPK20_05430) - 1180904..1182175 (+) 1272 WP_171933507.1 DUF945 family protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 23200.67 Da        Isoelectric Point: 7.8116

>NTDB_id=446127 HPK20_RS05410 WP_024374700.1 1176760..1177353(+) (tfoX) [Vibrio fluvialis strain A8]
MDMFEHRFFDYVIKFGTYQKRSMFGGIGLFQQDAMYALLTEDCIFIRGGEDLDEVLTNLGCDKYRHVKKQTTATVNYYDI
TQLFEQNHSELDSIIERSILYSIEQRSFQKSQANRRLRDLPNMQLTLERMVKKAGVDDVETFMRLGAPDVFNKVRRIYGS
DLDVKLLWKFAGAIEGIHWKLLQEPRKRQLLDICHGR

Nucleotide


Download         Length: 594 bp        

>NTDB_id=446127 HPK20_RS05410 WP_024374700.1 1176760..1177353(+) (tfoX) [Vibrio fluvialis strain A8]
ATGGATATGTTTGAGCATAGATTTTTCGATTATGTAATTAAGTTTGGTACCTACCAAAAACGTTCTATGTTTGGTGGTAT
TGGGTTGTTCCAGCAAGACGCGATGTATGCGCTGCTGACAGAAGATTGCATTTTCATTCGCGGCGGCGAAGATCTCGATG
AAGTTTTGACGAATCTTGGCTGTGATAAGTACCGTCATGTGAAGAAGCAGACAACGGCCACCGTTAATTACTACGATATT
ACGCAGTTATTTGAACAGAACCACTCTGAACTGGACTCCATTATTGAACGTTCAATACTGTATTCTATCGAGCAGCGCTC
TTTTCAGAAATCCCAGGCGAACCGTCGTTTGAGGGATTTACCGAATATGCAGTTGACGCTGGAACGAATGGTAAAGAAAG
CGGGCGTTGACGATGTGGAAACATTCATGCGTCTGGGTGCGCCGGATGTGTTTAACAAAGTTCGCCGCATTTATGGCAGC
GATCTGGATGTGAAGTTATTGTGGAAGTTTGCCGGAGCGATTGAAGGAATTCACTGGAAATTGCTGCAAGAGCCGCGTAA
GCGCCAATTGCTCGATATCTGTCACGGTCGTTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(114-192)

TfoX N-terminal domain (TfoX_N)

(12-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

80

98.985

0.792
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

80

98.985

0.792
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

80

98.985

0.792
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

80

98.985

0.792
  tfoX Vibrio cholerae strain A1552

80

98.985

0.792
  tfoX Vibrio campbellii strain DS40M4

67.692

98.985

0.67
  tfoX Vibrio parahaemolyticus RIMD 2210633

67.179

98.985

0.665
  tfoX Aliivibrio fischeri ES114

58.115

96.954

0.563