Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HPK14_RS23785 Genome accession   NZ_CP053662
Coordinates   4853771..4854307 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain eco-241     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4848771..4859307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPK14_RS23765 (HPK14_23510) soxR 4850500..4850964 (-) 465 WP_000412424.1 redox-sensitive transcriptional activator SoxR -
  HPK14_RS23770 (HPK14_23515) soxS 4851050..4851373 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  HPK14_RS23775 (HPK14_23520) pdeC 4851379..4852962 (-) 1584 WP_000019571.1 c-di-GMP phosphodiesterase PdeC -
  HPK14_RS23780 (HPK14_23525) yjcB 4853391..4853672 (+) 282 WP_001295689.1 YjcB family protein -
  HPK14_RS23785 (HPK14_23530) ssb 4853771..4854307 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HPK14_RS23790 (HPK14_23535) uvrA 4854562..4857384 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  HPK14_RS23795 (HPK14_23540) yjbR 4857419..4857775 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  HPK14_RS23800 (HPK14_23545) yjbQ 4857779..4858195 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HPK14_RS23805 (HPK14_23550) aphA 4858306..4859019 (-) 714 WP_001226928.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=446102 HPK14_RS23785 WP_000168305.1 4853771..4854307(-) (ssb) [Escherichia coli strain eco-241]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=446102 HPK14_RS23785 WP_000168305.1 4853771..4854307(-) (ssb) [Escherichia coli strain eco-241]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCTGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCTGGTCAGGATCGCTACACCACAGAAGTTGTGGTGAACGTTGG
CGGCACCATGCAGATGTTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCTGCT
CCGGCAGCACCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489