Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   XAV_RS14690 Genome accession   NZ_CP053649
Coordinates   3396423..3396953 (-) Length   176 a.a.
NCBI ID   WP_042823114.1    Uniprot ID   A0A098PYA8
Organism   Xanthomonas axonopodis pv. vasculorum strain NCPPB 796     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3391423..3401953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XAV_RS14675 (XAV_14730) paoA 3392208..3392858 (-) 651 WP_042823111.1 aldehyde dehydrogenase iron-sulfur subunit PaoA -
  XAV_RS14680 (XAV_14735) - 3393288..3394296 (-) 1009 Protein_2890 zinc-dependent alcohol dehydrogenase family protein -
  XAV_RS14685 (XAV_14740) - 3394588..3396135 (+) 1548 WP_171891057.1 sensor domain-containing diguanylate cyclase -
  XAV_RS14690 (XAV_14745) ssb 3396423..3396953 (-) 531 WP_042823114.1 single-stranded DNA-binding protein Machinery gene
  XAV_RS14695 (XAV_14750) - 3397230..3398228 (+) 999 WP_042823115.1 polyprenyl synthetase family protein -
  XAV_RS14700 (XAV_14755) - 3398433..3399233 (-) 801 WP_042823116.1 dienelactone hydrolase family protein -
  XAV_RS14705 (XAV_14760) murD 3399544..3400950 (-) 1407 WP_042823117.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18883.73 Da        Isoelectric Point: 5.3095

>NTDB_id=445976 XAV_RS14690 WP_042823114.1 3396423..3396953(-) (ssb) [Xanthomonas axonopodis pv. vasculorum strain NCPPB 796]
MARGINKVILVGNLGNDPDTKYTQAGMAITRVSLATSSMRKDRDGNNQERTEWHRVVFFGKLGEIAGEYLRKGSQVYVEG
ELRYDKYTGQDGVEKYSTDIVANEMQMLGGRGEGGGGGMGGDRPQRSAPRQQGGGGQGGSGYGGGGGQDYAPRRQQPAQQ
QSAPPMDDFADDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=445976 XAV_RS14690 WP_042823114.1 3396423..3396953(-) (ssb) [Xanthomonas axonopodis pv. vasculorum strain NCPPB 796]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGACACCAAGTACACCCAGGCCGGCAT
GGCAATCACGCGCGTGAGCCTGGCCACCAGCAGCATGCGCAAGGACCGCGACGGCAATAACCAGGAACGCACCGAGTGGC
ATCGCGTGGTGTTTTTCGGAAAGCTGGGCGAAATCGCCGGCGAGTACCTGCGCAAGGGCTCGCAGGTCTATGTCGAAGGC
GAACTGCGCTACGACAAGTACACCGGCCAGGACGGCGTGGAAAAGTACAGCACCGACATCGTCGCCAACGAGATGCAGAT
GCTGGGCGGCCGTGGTGAAGGCGGCGGTGGCGGGATGGGCGGCGATCGTCCGCAACGCTCGGCGCCGCGTCAGCAGGGCG
GTGGCGGGCAGGGCGGTAGCGGATATGGCGGCGGCGGTGGTCAGGACTACGCGCCGCGTCGTCAGCAGCCGGCCCAGCAG
CAGTCGGCACCGCCGATGGACGATTTCGCAGACGACGATATCCCATTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A098PYA8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

46.277

100

0.494
  ssb Glaesserella parasuis strain SC1401

45.652

100

0.477
  ssb Neisseria meningitidis MC58

43.784

100

0.46
  ssb Neisseria gonorrhoeae MS11

43.784

100

0.46