Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | HA036_RS14510 | Genome accession | NZ_CP053639 |
| Coordinates | 2854820..2855290 (-) | Length | 156 a.a. |
| NCBI ID | WP_000934770.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain 14732 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2824221..2880337 | 2854820..2855290 | within | 0 |
Gene organization within MGE regions
Location: 2824221..2880337
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HA036_RS14295 (HA036_14320) | scn | 2824221..2824571 (-) | 351 | WP_000702263.1 | complement inhibitor SCIN-A | - |
| HA036_RS14300 (HA036_14325) | - | 2825082..2825417 (-) | 336 | Protein_2747 | SH3 domain-containing protein | - |
| HA036_RS14305 (HA036_14330) | sak | 2826068..2826559 (-) | 492 | WP_000920038.1 | staphylokinase | - |
| HA036_RS14310 (HA036_14335) | - | 2826750..2827505 (-) | 756 | WP_000861038.1 | CHAP domain-containing protein | - |
| HA036_RS14315 (HA036_14340) | - | 2827517..2827771 (-) | 255 | WP_000611512.1 | phage holin | - |
| HA036_RS14320 (HA036_14345) | - | 2827823..2827930 (+) | 108 | WP_031762631.1 | hypothetical protein | - |
| HA036_RS14325 (HA036_14350) | pepG1 | 2827983..2828117 (-) | 135 | WP_000226108.1 | type I toxin-antitoxin system toxin PepG1 | - |
| HA036_RS14330 (HA036_14355) | sea | 2828268..2829041 (-) | 774 | WP_000750412.1 | staphylococcal enterotoxin type A | - |
| HA036_RS14335 (HA036_14360) | - | 2829414..2829788 (-) | 375 | WP_000340977.1 | hypothetical protein | - |
| HA036_RS14340 (HA036_14365) | - | 2829844..2830131 (-) | 288 | WP_001262621.1 | hypothetical protein | - |
| HA036_RS14345 (HA036_14370) | - | 2830177..2830329 (-) | 153 | WP_001000058.1 | hypothetical protein | - |
| HA036_RS14350 (HA036_14375) | - | 2830322..2834104 (-) | 3783 | WP_031836433.1 | phage tail spike protein | - |
| HA036_RS14355 (HA036_14380) | - | 2834120..2835604 (-) | 1485 | WP_000567408.1 | phage tail domain-containing protein | - |
| HA036_RS14360 (HA036_14385) | - | 2835601..2840130 (-) | 4530 | WP_031836434.1 | phage tail tape measure protein | - |
| HA036_RS14365 (HA036_14390) | - | 2840187..2840324 (-) | 138 | WP_001549167.1 | hypothetical protein | - |
| HA036_RS14370 (HA036_14395) | - | 2840375..2840725 (-) | 351 | WP_001096355.1 | hypothetical protein | - |
| HA036_RS14375 (HA036_14400) | - | 2840775..2840999 (-) | 225 | WP_072050172.1 | Ig-like domain-containing protein | - |
| HA036_RS14380 (HA036_14405) | - | 2841041..2841685 (-) | 645 | WP_000268741.1 | major tail protein | - |
| HA036_RS14385 (HA036_14410) | - | 2841686..2842093 (-) | 408 | WP_000565498.1 | hypothetical protein | - |
| HA036_RS14390 (HA036_14415) | - | 2842090..2842494 (-) | 405 | WP_000114225.1 | HK97 gp10 family phage protein | - |
| HA036_RS14395 (HA036_14420) | - | 2842491..2842853 (-) | 363 | WP_000755150.1 | head-tail adaptor protein | - |
| HA036_RS14400 (HA036_14425) | - | 2842837..2843121 (-) | 285 | WP_000150936.1 | phage head-tail adapter protein | - |
| HA036_RS14405 (HA036_14430) | - | 2843111..2843395 (-) | 285 | WP_000238236.1 | hypothetical protein | - |
| HA036_RS14410 (HA036_14435) | - | 2843415..2844560 (-) | 1146 | WP_000154555.1 | phage major capsid protein | - |
| HA036_RS14415 (HA036_14440) | - | 2844584..2845321 (-) | 738 | WP_000861914.1 | head maturation protease, ClpP-related | - |
| HA036_RS14420 (HA036_14445) | - | 2845305..2846492 (-) | 1188 | WP_000025274.1 | phage portal protein | - |
| HA036_RS14425 (HA036_14450) | - | 2846508..2848169 (-) | 1662 | WP_000625088.1 | terminase large subunit | - |
| HA036_RS14430 (HA036_14455) | - | 2848166..2848510 (-) | 345 | WP_000402904.1 | hypothetical protein | - |
| HA036_RS14435 (HA036_14460) | - | 2848640..2848939 (-) | 300 | WP_000988336.1 | HNH endonuclease | - |
| HA036_RS14440 (HA036_14465) | - | 2849171..2849587 (-) | 417 | WP_000590126.1 | hypothetical protein | - |
| HA036_RS14445 (HA036_14470) | - | 2849615..2849815 (-) | 201 | WP_000265039.1 | DUF1514 family protein | - |
| HA036_RS14450 (HA036_14475) | - | 2849815..2849964 (-) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| HA036_RS14455 (HA036_14480) | - | 2849961..2850167 (-) | 207 | WP_000195820.1 | DUF1381 domain-containing protein | - |
| HA036_RS14460 (HA036_14485) | - | 2850204..2850740 (-) | 537 | WP_001066444.1 | dUTPase | - |
| HA036_RS14775 | - | 2851096..2851221 (-) | 126 | Protein_2780 | DUF1024 family protein | - |
| HA036_RS14470 (HA036_14495) | - | 2851214..2851624 (-) | 411 | WP_000197968.1 | hypothetical protein | - |
| HA036_RS14475 (HA036_14500) | - | 2851621..2852130 (-) | 510 | WP_001105598.1 | hypothetical protein | - |
| HA036_RS14480 (HA036_14505) | - | 2852127..2852576 (-) | 450 | WP_000982711.1 | YopX family protein | - |
| HA036_RS14485 (HA036_14510) | - | 2852641..2852883 (-) | 243 | WP_000131366.1 | SAV1978 family virulence-associated passenger protein | - |
| HA036_RS14490 (HA036_14515) | - | 2852887..2853255 (-) | 369 | WP_000101274.1 | SA1788 family PVL leukocidin-associated protein | - |
| HA036_RS14495 (HA036_14520) | - | 2853268..2853672 (-) | 405 | WP_000401964.1 | RusA family crossover junction endodeoxyribonuclease | - |
| HA036_RS14500 (HA036_14525) | - | 2853681..2853899 (-) | 219 | WP_000338528.1 | hypothetical protein | - |
| HA036_RS14505 (HA036_14530) | - | 2853906..2854790 (-) | 885 | WP_000148301.1 | DnaD domain protein | - |
| HA036_RS14510 (HA036_14535) | ssbA | 2854820..2855290 (-) | 471 | WP_000934770.1 | single-stranded DNA-binding protein | Machinery gene |
| HA036_RS14515 (HA036_14540) | - | 2855291..2855908 (-) | 618 | WP_235686151.1 | MBL fold metallo-hydrolase | - |
| HA036_RS14520 (HA036_14545) | - | 2855989..2856909 (-) | 921 | WP_000138481.1 | recombinase RecT | - |
| HA036_RS14525 (HA036_14550) | - | 2856911..2858854 (-) | 1944 | WP_000700565.1 | AAA family ATPase | - |
| HA036_RS14530 (HA036_14555) | - | 2858863..2859126 (-) | 264 | WP_001205732.1 | hypothetical protein | - |
| HA036_RS14535 (HA036_14560) | - | 2859135..2859395 (-) | 261 | WP_000291489.1 | DUF1108 family protein | - |
| HA036_RS14540 (HA036_14565) | - | 2859488..2859649 (-) | 162 | WP_000066020.1 | DUF1270 domain-containing protein | - |
| HA036_RS14545 (HA036_14570) | - | 2859646..2859966 (-) | 321 | WP_001120197.1 | DUF771 domain-containing protein | - |
| HA036_RS14550 (HA036_14575) | - | 2860025..2860657 (+) | 633 | WP_000275058.1 | hypothetical protein | - |
| HA036_RS14555 (HA036_14580) | - | 2860672..2860812 (-) | 141 | WP_000939496.1 | hypothetical protein | - |
| HA036_RS14560 (HA036_14585) | - | 2860843..2861040 (-) | 198 | WP_001148861.1 | hypothetical protein | - |
| HA036_RS14565 (HA036_14590) | - | 2861056..2861805 (-) | 750 | WP_001148337.1 | phage antirepressor KilAC domain-containing protein | - |
| HA036_RS14570 (HA036_14595) | - | 2861862..2862401 (+) | 540 | WP_000351243.1 | hypothetical protein | - |
| HA036_RS14575 (HA036_14600) | - | 2862425..2862685 (-) | 261 | WP_000435341.1 | transcriptional regulator | - |
| HA036_RS14580 (HA036_14605) | - | 2862703..2862927 (-) | 225 | WP_000338186.1 | DUF739 family protein | - |
| HA036_RS14585 (HA036_14610) | - | 2863086..2863856 (+) | 771 | WP_031783378.1 | S24 family peptidase | - |
| HA036_RS14590 (HA036_14615) | - | 2864056..2864238 (+) | 183 | WP_000705240.1 | hypothetical protein | - |
| HA036_RS14595 (HA036_14620) | - | 2864274..2864420 (+) | 147 | WP_001013104.1 | hypothetical protein | - |
| HA036_RS14600 (HA036_14625) | - | 2864417..2865031 (-) | 615 | WP_000191459.1 | hypothetical protein | - |
| HA036_RS14605 (HA036_14630) | - | 2865139..2866176 (+) | 1038 | WP_000857176.1 | site-specific integrase | - |
| HA036_RS14610 (HA036_14635) | sph | 2866227..2867057 (+) | 831 | Protein_2809 | sphingomyelin phosphodiesterase | - |
| HA036_RS14615 (HA036_14640) | lukG | 2867295..2868311 (-) | 1017 | WP_000595324.1 | bi-component leukocidin LukGH subunit G | - |
| HA036_RS14620 (HA036_14645) | lukH | 2868333..2869388 (-) | 1056 | WP_000791407.1 | bi-component leukocidin LukGH subunit H | - |
| HA036_RS14625 (HA036_14650) | - | 2869823..2871046 (+) | 1224 | WP_000206638.1 | ArgE/DapE family deacylase | - |
| HA036_RS14630 (HA036_14655) | - | 2871418..2872263 (-) | 846 | WP_000812008.1 | class I SAM-dependent methyltransferase | - |
| HA036_RS14635 (HA036_14660) | - | 2872325..2873236 (-) | 912 | WP_000825510.1 | iron-hydroxamate ABC transporter substrate-binding protein | - |
| HA036_RS14640 (HA036_14665) | - | 2873397..2874704 (+) | 1308 | WP_001045079.1 | TrkH family potassium uptake protein | - |
| HA036_RS14645 (HA036_14670) | - | 2875557..2876000 (-) | 444 | WP_000022887.1 | GNAT family N-acetyltransferase | - |
| HA036_RS14650 (HA036_14675) | - | 2876106..2876542 (-) | 437 | Protein_2817 | hypothetical protein | - |
| HA036_RS14655 (HA036_14680) | - | 2876860..2877450 (-) | 591 | WP_031806879.1 | terminase small subunit | - |
| HA036_RS14660 (HA036_14685) | - | 2877447..2877659 (-) | 213 | WP_000128898.1 | hypothetical protein | - |
| HA036_RS14665 (HA036_14690) | - | 2877720..2878266 (+) | 547 | Protein_2820 | site-specific integrase | - |
| HA036_RS14670 (HA036_14695) | groL | 2878361..2879977 (-) | 1617 | WP_000240645.1 | chaperonin GroEL | - |
| HA036_RS14675 (HA036_14700) | groES | 2880053..2880337 (-) | 285 | WP_000917289.1 | co-chaperone GroES | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17713.63 Da Isoelectric Point: 5.2672
>NTDB_id=445895 HA036_RS14510 WP_000934770.1 2854820..2855290(-) (ssbA) [Staphylococcus aureus strain 14732]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANVPIEIDDNDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANVPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=445895 HA036_RS14510 WP_000934770.1 2854820..2855290(-) (ssbA) [Staphylococcus aureus strain 14732]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGTTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGTTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.367 |
100 |
0.628 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.551 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |