Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | HPC59_RS06465 | Genome accession | NZ_CP053619 |
| Coordinates | 1341427..1341912 (+) | Length | 161 a.a. |
| NCBI ID | WP_005711354.1 | Uniprot ID | - |
| Organism | Lacticaseibacillus rhamnosus strain LV108 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1332057..1373649 | 1341427..1341912 | within | 0 |
Gene organization within MGE regions
Location: 1332057..1373649
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPC59_RS06385 (HPC59_06675) | - | 1332057..1333241 (-) | 1185 | WP_005714751.1 | tyrosine-type recombinase/integrase | - |
| HPC59_RS06395 (HPC59_06685) | - | 1333586..1334587 (-) | 1002 | WP_005714749.1 | hypothetical protein | - |
| HPC59_RS06400 (HPC59_06690) | - | 1334701..1335291 (-) | 591 | WP_020751902.1 | DUF5067 domain-containing protein | - |
| HPC59_RS06405 (HPC59_06695) | - | 1335351..1335773 (-) | 423 | WP_003594164.1 | ImmA/IrrE family metallo-endopeptidase | - |
| HPC59_RS06410 (HPC59_06700) | - | 1335763..1336098 (-) | 336 | WP_005714743.1 | helix-turn-helix domain-containing protein | - |
| HPC59_RS06415 (HPC59_06705) | - | 1336236..1336478 (+) | 243 | WP_005711333.1 | helix-turn-helix domain-containing protein | - |
| HPC59_RS06420 (HPC59_06710) | - | 1336475..1336633 (+) | 159 | WP_005711335.1 | hypothetical protein | - |
| HPC59_RS06425 (HPC59_06715) | - | 1336651..1337382 (+) | 732 | WP_005711337.1 | antA/AntB antirepressor family protein | - |
| HPC59_RS06430 (HPC59_06720) | - | 1337448..1337996 (+) | 549 | WP_005714742.1 | hypothetical protein | - |
| HPC59_RS06435 (HPC59_06725) | - | 1337975..1338205 (+) | 231 | WP_005711341.1 | hypothetical protein | - |
| HPC59_RS13880 | - | 1338209..1338337 (+) | 129 | WP_005711343.1 | hypothetical protein | - |
| HPC59_RS06440 (HPC59_06730) | - | 1338349..1338576 (+) | 228 | WP_005711345.1 | hypothetical protein | - |
| HPC59_RS06445 (HPC59_06735) | - | 1338569..1338772 (+) | 204 | WP_005711347.1 | hypothetical protein | - |
| HPC59_RS06450 (HPC59_06740) | - | 1338783..1339658 (+) | 876 | WP_005711348.1 | recombinase RecT | - |
| HPC59_RS06455 (HPC59_06745) | - | 1339594..1340442 (+) | 849 | WP_286011666.1 | PD-(D/E)XK nuclease-like domain-containing protein | - |
| HPC59_RS06460 (HPC59_06750) | - | 1340458..1341414 (+) | 957 | WP_005711352.1 | DnaD domain-containing protein | - |
| HPC59_RS06465 (HPC59_06755) | ssb | 1341427..1341912 (+) | 486 | WP_005711354.1 | single-stranded DNA-binding protein | Machinery gene |
| HPC59_RS06470 (HPC59_06760) | - | 1342220..1342435 (+) | 216 | WP_005711356.1 | helix-turn-helix transcriptional regulator | - |
| HPC59_RS06475 (HPC59_06765) | - | 1342432..1342881 (+) | 450 | WP_005711359.1 | hypothetical protein | - |
| HPC59_RS06480 (HPC59_06770) | - | 1342928..1343182 (+) | 255 | WP_005711361.1 | hypothetical protein | - |
| HPC59_RS06485 (HPC59_06775) | - | 1343179..1343544 (+) | 366 | WP_005714739.1 | hypothetical protein | - |
| HPC59_RS06490 (HPC59_06780) | - | 1343557..1344021 (+) | 465 | WP_005711364.1 | hypothetical protein | - |
| HPC59_RS13820 | - | 1344033..1344284 (+) | 252 | WP_005711366.1 | hypothetical protein | - |
| HPC59_RS06495 (HPC59_06785) | - | 1344404..1344910 (+) | 507 | WP_005711368.1 | DUF1642 domain-containing protein | - |
| HPC59_RS06500 (HPC59_06790) | - | 1344900..1345250 (+) | 351 | WP_005711370.1 | hypothetical protein | - |
| HPC59_RS13905 | - | 1345247..1345455 (+) | 209 | Protein_1259 | hypothetical protein | - |
| HPC59_RS06505 (HPC59_06795) | - | 1345583..1345804 (+) | 222 | WP_005711376.1 | helix-turn-helix domain-containing protein | - |
| HPC59_RS06510 (HPC59_06800) | - | 1346013..1346441 (+) | 429 | WP_005711378.1 | hypothetical protein | - |
| HPC59_RS06515 (HPC59_06805) | - | 1346774..1347634 (+) | 861 | WP_005711380.1 | hypothetical protein | - |
| HPC59_RS06520 (HPC59_06810) | - | 1348175..1349323 (+) | 1149 | WP_005711382.1 | GcrA family cell cycle regulator | - |
| HPC59_RS06525 (HPC59_06815) | - | 1349316..1349639 (+) | 324 | WP_005711383.1 | hypothetical protein | - |
| HPC59_RS06530 (HPC59_06820) | - | 1349676..1350209 (+) | 534 | WP_005711385.1 | terminase small subunit | - |
| HPC59_RS06535 (HPC59_06825) | - | 1350187..1351542 (+) | 1356 | WP_005714737.1 | PBSX family phage terminase large subunit | - |
| HPC59_RS06540 (HPC59_06830) | - | 1351547..1352935 (+) | 1389 | WP_005711389.1 | phage portal protein | - |
| HPC59_RS06545 (HPC59_06835) | - | 1353019..1354680 (+) | 1662 | WP_225436871.1 | minor capsid protein | - |
| HPC59_RS06550 (HPC59_06840) | - | 1354829..1355485 (+) | 657 | WP_005711393.1 | DUF4355 domain-containing protein | - |
| HPC59_RS06555 (HPC59_06845) | - | 1355501..1356514 (+) | 1014 | WP_005711395.1 | hypothetical protein | - |
| HPC59_RS06560 (HPC59_06850) | - | 1356742..1357116 (+) | 375 | WP_005711397.1 | phage head-tail connector protein | - |
| HPC59_RS06565 (HPC59_06855) | - | 1357121..1357423 (+) | 303 | WP_005711399.1 | hypothetical protein | - |
| HPC59_RS06570 (HPC59_06860) | - | 1357420..1357785 (+) | 366 | WP_005711401.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| HPC59_RS06575 (HPC59_06865) | - | 1357786..1358190 (+) | 405 | WP_003582636.1 | DUF3168 domain-containing protein | - |
| HPC59_RS06580 (HPC59_06870) | - | 1358202..1358807 (+) | 606 | WP_005711403.1 | phage tail tube protein | - |
| HPC59_RS06585 (HPC59_06875) | - | 1358894..1359226 (+) | 333 | WP_005711405.1 | tail assembly chaperone | - |
| HPC59_RS06590 (HPC59_06880) | - | 1359331..1359684 (+) | 354 | WP_005711407.1 | hypothetical protein | - |
| HPC59_RS06595 (HPC59_06885) | - | 1359677..1362766 (+) | 3090 | WP_005711409.1 | tape measure protein | - |
| HPC59_RS06600 (HPC59_06890) | - | 1362767..1364755 (+) | 1989 | WP_005714730.1 | distal tail protein Dit | - |
| HPC59_RS06605 (HPC59_06895) | - | 1364756..1367191 (+) | 2436 | WP_020751906.1 | phage tail protein | - |
| HPC59_RS06610 (HPC59_06900) | - | 1367193..1367483 (+) | 291 | WP_005713395.1 | hypothetical protein | - |
| HPC59_RS13825 (HPC59_06905) | - | 1367476..1367607 (+) | 132 | WP_005714777.1 | XkdX family protein | - |
| HPC59_RS06615 (HPC59_06910) | - | 1367637..1367927 (+) | 291 | WP_005714776.1 | hypothetical protein | - |
| HPC59_RS06620 (HPC59_06915) | - | 1367920..1368366 (+) | 447 | WP_005714775.1 | phage holin | - |
| HPC59_RS06625 (HPC59_06920) | - | 1368377..1369561 (+) | 1185 | WP_005713391.1 | GH25 family lysozyme | - |
| HPC59_RS13910 | - | 1369759..1369833 (+) | 75 | Protein_1286 | glucose-6-phosphate isomerase | - |
| HPC59_RS06630 (HPC59_06925) | - | 1370181..1370468 (-) | 288 | WP_005713389.1 | putative quinol monooxygenase | - |
| HPC59_RS06635 (HPC59_06930) | - | 1370763..1371614 (-) | 852 | WP_005713388.1 | DNA/RNA non-specific endonuclease | - |
| HPC59_RS06640 (HPC59_06935) | - | 1371614..1372357 (-) | 744 | WP_005713386.1 | hypothetical protein | - |
| HPC59_RS06645 (HPC59_06940) | - | 1372486..1373649 (-) | 1164 | WP_005713749.1 | glycosyltransferase | - |
Sequence
Protein
Download Length: 161 a.a. Molecular weight: 17645.39 Da Isoelectric Point: 7.9701
>NTDB_id=445653 HPC59_RS06465 WP_005711354.1 1341427..1341912(+) (ssb) [Lacticaseibacillus rhamnosus strain LV108]
MLNSVSLTGRLTRDVDLRYTQSGTAAGSFTLAVDRKFKSKNGERETDFVNCQIWRKSAENFANFTKKGSLVGVEGRIQTR
TYDNAQGQKIFVTEVIVDNFALLESRQTSQNSPKSQQTVNASAAATTNASQTTPNASRANTTDPFANNGQPIDIQDDDLP
F
MLNSVSLTGRLTRDVDLRYTQSGTAAGSFTLAVDRKFKSKNGERETDFVNCQIWRKSAENFANFTKKGSLVGVEGRIQTR
TYDNAQGQKIFVTEVIVDNFALLESRQTSQNSPKSQQTVNASAAATTNASQTTPNASRANTTDPFANNGQPIDIQDDDLP
F
Nucleotide
Download Length: 486 bp
>NTDB_id=445653 HPC59_RS06465 WP_005711354.1 1341427..1341912(+) (ssb) [Lacticaseibacillus rhamnosus strain LV108]
TTGCTAAACAGTGTCTCACTAACAGGCCGGCTGACAAGAGATGTTGACTTGCGTTACACGCAAAGTGGCACGGCGGCAGG
ATCATTCACGCTGGCCGTTGACCGCAAATTCAAGAGCAAAAACGGAGAACGAGAAACTGATTTCGTAAATTGCCAGATTT
GGCGCAAGTCGGCTGAGAACTTTGCAAACTTCACCAAAAAAGGATCCTTGGTTGGTGTGGAAGGCCGTATTCAAACGCGT
ACGTACGATAACGCGCAAGGGCAGAAAATATTCGTGACCGAGGTAATCGTTGATAATTTTGCTTTGCTTGAGTCACGACA
GACGTCTCAGAACAGTCCTAAATCACAGCAAACAGTCAATGCATCAGCAGCAGCGACCACAAACGCGAGTCAAACGACTC
CAAATGCTTCACGAGCGAATACCACGGATCCGTTTGCTAATAATGGCCAGCCGATAGACATCCAAGATGATGATTTGCCA
TTTTAA
TTGCTAAACAGTGTCTCACTAACAGGCCGGCTGACAAGAGATGTTGACTTGCGTTACACGCAAAGTGGCACGGCGGCAGG
ATCATTCACGCTGGCCGTTGACCGCAAATTCAAGAGCAAAAACGGAGAACGAGAAACTGATTTCGTAAATTGCCAGATTT
GGCGCAAGTCGGCTGAGAACTTTGCAAACTTCACCAAAAAAGGATCCTTGGTTGGTGTGGAAGGCCGTATTCAAACGCGT
ACGTACGATAACGCGCAAGGGCAGAAAATATTCGTGACCGAGGTAATCGTTGATAATTTTGCTTTGCTTGAGTCACGACA
GACGTCTCAGAACAGTCCTAAATCACAGCAAACAGTCAATGCATCAGCAGCAGCGACCACAAACGCGAGTCAAACGACTC
CAAATGCTTCACGAGCGAATACCACGGATCCGTTTGCTAATAATGGCCAGCCGATAGACATCCAAGATGATGATTTGCCA
TTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
62.791 |
100 |
0.671 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
49.419 |
100 |
0.528 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
54.717 |
65.839 |
0.36 |
| ssb | Neisseria meningitidis MC58 |
33.526 |
100 |
0.36 |