Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HPS43_RS09420 Genome accession   NZ_CP053618
Coordinates   2002230..2002751 (-) Length   173 a.a.
NCBI ID   WP_026382027.1    Uniprot ID   A0A6S7E5D3
Organism   Achromobacter xylosoxidans strain GN008     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1997230..2007751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPS43_RS09390 (HPS43_09405) - 1997422..1998039 (+) 618 WP_020925847.1 TetR/AcrR family transcriptional regulator -
  HPS43_RS09395 (HPS43_09410) - 1998346..1999203 (+) 858 WP_058665528.1 hypothetical protein -
  HPS43_RS09400 (HPS43_09415) - 1999338..1999928 (-) 591 WP_173010603.1 TetR/AcrR family transcriptional regulator -
  HPS43_RS09405 (HPS43_09420) - 2000060..2000365 (-) 306 WP_020925844.1 DUF4148 domain-containing protein -
  HPS43_RS09410 (HPS43_09425) - 2000446..2000751 (-) 306 WP_006389666.1 DUF4148 domain-containing protein -
  HPS43_RS09415 (HPS43_09430) - 2001016..2001744 (-) 729 WP_053496942.1 class I SAM-dependent methyltransferase -
  HPS43_RS09420 (HPS43_09435) ssb 2002230..2002751 (-) 522 WP_026382027.1 single-stranded DNA-binding protein Machinery gene
  HPS43_RS09425 (HPS43_09440) - 2003034..2004218 (-) 1185 WP_054507841.1 MFS transporter -
  HPS43_RS09430 (HPS43_09445) uvrA 2004353..2007208 (+) 2856 WP_020925836.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18656.68 Da        Isoelectric Point: 5.9656

>NTDB_id=445626 HPS43_RS09420 WP_026382027.1 2002230..2002751(-) (ssb) [Achromobacter xylosoxidans strain GN008]
MASVNKVILVGNLGRDPEVRYSPDGAAICNMSIATTSTWKDKASGERREETEWHRVVMYNRLAEIAGEYLKKGRSVYIEG
RLKTRKWQDKDTGADRYSTEIVADQMQMLGGREDGGGGGGSYGGGGGYDDAPARQPQQRAPAQRPAPQQRPAPQAAPAGG
GANLADMDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=445626 HPS43_RS09420 WP_026382027.1 2002230..2002751(-) (ssb) [Achromobacter xylosoxidans strain GN008]
ATGGCATCGGTTAACAAAGTCATTCTCGTGGGCAACCTGGGTCGCGACCCGGAAGTCCGCTACAGCCCCGACGGGGCCGC
AATCTGCAACATGTCCATCGCCACCACCTCCACCTGGAAGGACAAGGCCTCGGGCGAGCGCCGCGAAGAAACCGAATGGC
ACCGCGTGGTCATGTACAACCGCCTGGCCGAGATCGCCGGCGAATACCTGAAGAAGGGCCGCTCGGTGTACATCGAAGGC
CGCCTGAAGACCCGCAAGTGGCAGGACAAGGACACCGGCGCTGACCGCTACAGCACCGAAATCGTAGCCGACCAGATGCA
GATGCTGGGCGGCCGCGAAGATGGCGGCGGCGGTGGCGGCAGCTATGGCGGAGGCGGCGGTTACGACGACGCGCCGGCAC
GCCAGCCGCAGCAACGCGCCCCGGCCCAGCGCCCGGCGCCGCAACAGCGTCCGGCACCGCAGGCCGCGCCCGCCGGTGGC
GGCGCCAACCTGGCCGACATGGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6S7E5D3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.645

100

0.578
  ssb Glaesserella parasuis strain SC1401

51.075

100

0.549
  ssb Neisseria gonorrhoeae MS11

53.143

100

0.538
  ssb Neisseria meningitidis MC58

52.571

100

0.532