Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MBR110_RS04035 Genome accession   NZ_CP053609
Coordinates   867060..867611 (+) Length   183 a.a.
NCBI ID   WP_011886042.1    Uniprot ID   A0A132DD07
Organism   Burkholderia sp. MBR-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 862060..872611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MBR110_RS04025 (MBR110_04055) uvrA 862621..865506 (-) 2886 WP_011886044.1 excinuclease ABC subunit UvrA -
  MBR110_RS04030 (MBR110_04060) - 865769..866956 (+) 1188 WP_060044338.1 MFS transporter -
  MBR110_RS04035 (MBR110_04065) ssb 867060..867611 (+) 552 WP_011886042.1 single-stranded DNA-binding protein Machinery gene
  MBR110_RS04040 (MBR110_04070) - 867868..869052 (+) 1185 WP_181709175.1 site-specific integrase -
  MBR110_RS04045 (MBR110_04075) - 869164..870702 (+) 1539 WP_181709176.1 tyrosine-type recombinase/integrase -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 18745.49 Da        Isoelectric Point: 5.3400

>NTDB_id=445538 MBR110_RS04035 WP_011886042.1 867060..867611(+) (ssb) [Burkholderia sp. MBR-1]
MASVNKVILVGNLGADPEVRYLPSGDAVANIRLATTDRYKDKASGDFKEMTEWHRVAFFGRLAEIVSEYLKKGSSVYIEG
RIRTRKWQGQDGQDRYSTEIVADQMQMLGGRGGAGGGGGGGDEGGYGGGYGGGGGSRGGEQAERGSRAGGASRGGAGGAG
GGQSRPSAPAGGGFDEMDDDIPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=445538 MBR110_RS04035 WP_011886042.1 867060..867611(+) (ssb) [Burkholderia sp. MBR-1]
ATGGCATCCGTCAACAAGGTCATCCTCGTCGGCAATCTCGGCGCCGATCCTGAAGTCCGTTACCTGCCGAGCGGCGACGC
GGTTGCGAACATCCGTCTCGCGACGACCGATCGCTACAAGGACAAGGCGAGCGGCGACTTCAAGGAAATGACCGAGTGGC
ACCGCGTCGCGTTCTTCGGCCGGCTCGCCGAGATCGTCAGCGAATACCTGAAGAAGGGTTCGTCGGTCTACATCGAGGGT
CGTATCCGCACGCGCAAGTGGCAGGGCCAGGATGGCCAGGATCGCTACTCGACCGAAATCGTCGCCGACCAGATGCAGAT
GCTCGGCGGCCGCGGCGGTGCGGGCGGCGGCGGTGGCGGCGGTGACGAAGGCGGTTACGGCGGCGGCTACGGTGGTGGCG
GCGGCAGCCGCGGCGGCGAGCAGGCGGAACGCGGCAGCCGTGCCGGCGGCGCATCGCGCGGCGGTGCGGGCGGTGCAGGT
GGCGGCCAGAGCCGTCCGAGCGCGCCGGCAGGCGGCGGCTTCGACGAGATGGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A132DD07

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.741

100

0.525
  ssb Glaesserella parasuis strain SC1401

46.524

100

0.475
  ssb Neisseria gonorrhoeae MS11

43.169

100

0.432
  ssb Neisseria meningitidis MC58

42.541

98.907

0.421