Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HO393_RS20015 Genome accession   NZ_CP053605
Coordinates   4162970..4163506 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain NEB_Turbo     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4157970..4168506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HO393_RS19995 (HO393_20000) aphA 4158259..4158972 (+) 714 WP_001226928.1 acid phosphatase AphA -
  HO393_RS20000 (HO393_20005) yjbQ 4159083..4159499 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HO393_RS20005 (HO393_20010) yjbR 4159503..4159859 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  HO393_RS20010 (HO393_20015) uvrA 4159894..4162716 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  HO393_RS20015 (HO393_20020) ssb 4162970..4163506 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HO393_RS20020 (HO393_20025) yjcB 4163605..4163886 (-) 282 WP_001295689.1 YjcB family protein -
  HO393_RS20025 (HO393_20030) pdeC 4164316..4165902 (+) 1587 WP_000019548.1 c-di-GMP phosphodiesterase PdeC -
  HO393_RS20030 (HO393_20035) soxS 4165905..4166228 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  HO393_RS20035 (HO393_20040) soxR 4166314..4166778 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=445513 HO393_RS20015 WP_000168305.1 4162970..4163506(+) (ssb) [Escherichia coli strain NEB_Turbo]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=445513 HO393_RS20015 WP_000168305.1 4162970..4163506(+) (ssb) [Escherichia coli strain NEB_Turbo]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489