Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   HJG54_RS04800 Genome accession   NZ_CP053586
Coordinates   1252459..1252827 (-) Length   122 a.a.
NCBI ID   WP_316433679.1    Uniprot ID   -
Organism   Leptolyngbya sp. NK1-12     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1247459..1257827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HJG54_RS04775 (HJG54_04790) - 1247639..1247737 (+) 99 WP_036002272.1 photosystem II reaction center protein T -
  HJG54_RS04780 (HJG54_04795) nrdR 1248009..1248581 (+) 573 WP_036002277.1 transcriptional regulator NrdR -
  HJG54_RS04785 (HJG54_04800) - 1248892..1249860 (+) 969 WP_036002280.1 30S ribosomal protein S1 -
  HJG54_RS04790 (HJG54_04805) - 1250034..1250780 (+) 747 WP_316433676.1 HAD family hydrolase -
  HJG54_RS04795 (HJG54_04810) metK 1250992..1252248 (+) 1257 WP_316433678.1 methionine adenosyltransferase -
  HJG54_RS04800 (HJG54_04815) pilH 1252459..1252827 (-) 369 WP_316433679.1 response regulator Machinery gene
  HJG54_RS04805 (HJG54_04820) - 1253014..1253937 (-) 924 WP_063834728.1 SPFH domain-containing protein -
  HJG54_RS04810 (HJG54_04825) - 1253995..1254468 (-) 474 WP_211627634.1 NfeD family protein -
  HJG54_RS04815 (HJG54_04830) - 1254644..1256602 (-) 1959 WP_316433681.1 alpha/beta fold hydrolase -
  HJG54_RS04820 (HJG54_04835) - 1256725..1257762 (-) 1038 WP_316433682.1 glycosyltransferase -

Sequence

Protein


Download         Length: 122 a.a.        Molecular weight: 13693.95 Da        Isoelectric Point: 4.8604

>NTDB_id=445268 HJG54_RS04800 WP_316433679.1 1252459..1252827(-) (pilH) [Leptolyngbya sp. NK1-12]
MSIVLVVDDSQTVRQMLSELLKQGGLTVVEAANGLEAKAKIQTKAPDLVITDLVMPEMNGYELCRWIKNDPVAQNIPILI
CSTKDQEFDRYWGMKQGADAYITKPFQPGEMLETVKQLLHTK

Nucleotide


Download         Length: 369 bp        

>NTDB_id=445268 HJG54_RS04800 WP_316433679.1 1252459..1252827(-) (pilH) [Leptolyngbya sp. NK1-12]
ATGAGTATAGTTTTGGTGGTCGATGACAGTCAAACCGTCCGACAAATGCTCTCAGAGCTGTTGAAGCAGGGAGGGTTGAC
CGTAGTTGAAGCAGCCAATGGTTTGGAAGCCAAAGCCAAAATTCAGACCAAGGCCCCTGATCTCGTTATCACTGACCTAG
TAATGCCGGAAATGAACGGCTATGAATTATGCCGCTGGATTAAGAATGATCCGGTTGCTCAAAATATTCCTATTTTGATT
TGTTCTACCAAGGACCAAGAGTTTGATCGTTACTGGGGTATGAAGCAGGGAGCTGATGCCTATATTACAAAGCCGTTTCA
ACCTGGGGAAATGCTGGAGACTGTGAAGCAGCTTTTGCATACCAAATGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

56.198

99.18

0.557
  pilG Acinetobacter baumannii strain A118

42.105

93.443

0.393
  micA Streptococcus pneumoniae Cp1015

38.333

98.361

0.377
  vicR Streptococcus mutans UA159

36.975

97.541

0.361