Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HPG89_RS13445 Genome accession   NZ_CP053585
Coordinates   2827115..2827645 (+) Length   176 a.a.
NCBI ID   WP_000168322.1    Uniprot ID   -
Organism   Salmonella enterica strain 2011K-1440     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2822115..2832645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPG89_RS13420 (HPG89_13425) - 2822354..2822770 (+) 417 WP_046094304.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HPG89_RS13425 (HPG89_13430) - 2822773..2823129 (+) 357 WP_000155666.1 MmcQ/YjbR family DNA-binding protein -
  HPG89_RS13430 (HPG89_13435) - 2823130..2823468 (-) 339 WP_000146606.1 hypothetical protein -
  HPG89_RS13435 (HPG89_13440) - 2823455..2823910 (-) 456 WP_171804329.1 hypothetical protein -
  HPG89_RS13440 (HPG89_13445) uvrA 2824042..2826867 (-) 2826 WP_000357725.1 excinuclease ABC subunit UvrA -
  HPG89_RS13445 (HPG89_13450) ssb 2827115..2827645 (+) 531 WP_000168322.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HPG89_RS13450 (HPG89_13455) siiA 2828715..2829347 (+) 633 WP_046094300.1 SPI-4 type I secretion system auxiliary protein SiiA -
  HPG89_RS13455 (HPG89_13460) - 2829344..2830732 (+) 1389 WP_046094299.1 MotA/TolQ/ExbB proton channel family protein -
  HPG89_RS13460 (HPG89_13465) siiC 2830722..2832041 (+) 1320 WP_046094298.1 SPI-4 type I secretion system protein SiiC -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19074.15 Da        Isoelectric Point: 5.2456

>NTDB_id=445261 HPG89_RS13445 WP_000168322.1 2827115..2827645(+) (ssb) [Salmonella enterica strain 2011K-1440]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANLTLATSESWRDKQTGEMKEQTEWHRVVMFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQERYTTEINVPQIGGVMQMLGGRQGGGAPAGGQQQGGWGQPQQPQQPQGGNQFSGGAQSRPQQSAP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=445261 HPG89_RS13445 WP_000168322.1 2827115..2827645(+) (ssb) [Salmonella enterica strain 2011K-1440]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTTGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAGTGG
CGGCGCTGTCGCCAACTTAACGCTGGCTACTTCTGAATCCTGGCGCGATAAGCAGACCGGCGAAATGAAAGAGCAGACTG
AATGGCACCGCGTGGTGATGTTCGGCAAGCTGGCGGAAGTGGCCGGCGAATATCTGCGTAAAGGTTCTCAGGTGTATATC
GAAGGCCAACTGCGTACCCGCAAGTGGACCGATCAGAGTGGCCAGGAACGCTATACGACTGAAATTAACGTTCCGCAGAT
CGGCGGCGTGATGCAGATGCTGGGTGGTCGCCAGGGCGGCGGCGCACCGGCAGGCGGTCAGCAGCAGGGGGGTTGGGGTC
AGCCGCAACAACCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGTGGCGCGCAGTCGCGTCCACAGCAATCCGCGCCA
GCGCCGTCTAACGAACCGCCAATGGATTTTGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.978

100

0.744
  ssb Glaesserella parasuis strain SC1401

60.109

100

0.625
  ssb Neisseria gonorrhoeae MS11

46.448

100

0.483
  ssb Neisseria meningitidis MC58

46.409

100

0.477