Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HF677_RS21945 Genome accession   NZ_CP053573
Coordinates   4625265..4625789 (-) Length   174 a.a.
NCBI ID   WP_003826621.1    Uniprot ID   A0A5B0T4S2
Organism   Citrobacter sp. TSA-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4620265..4630789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HF677_RS21925 (HF677_021975) soxR 4621908..4622366 (-) 459 WP_016155363.1 redox-sensitive transcriptional activator SoxR -
  HF677_RS21930 (HF677_021980) soxS 4622453..4622776 (+) 324 WP_016155362.1 superoxide response transcriptional regulator SoxS -
  HF677_RS21935 (HF677_021985) - 4622779..4624365 (-) 1587 WP_080860345.1 EAL domain-containing protein -
  HF677_RS21940 (HF677_021990) - 4624917..4625198 (+) 282 WP_016155360.1 YjcB family protein -
  HF677_RS21945 (HF677_021995) ssb 4625265..4625789 (-) 525 WP_003826621.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HF677_RS21950 (HF677_022000) uvrA 4626041..4628863 (+) 2823 WP_016155358.1 excinuclease ABC subunit UvrA -
  HF677_RS21955 (HF677_022005) - 4628958..4629314 (-) 357 WP_016155357.1 MmcQ/YjbR family DNA-binding protein -
  HF677_RS21960 (HF677_022010) aphA 4629441..4630154 (-) 714 WP_003826615.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18621.66 Da        Isoelectric Point: 5.2456

>NTDB_id=445239 HF677_RS21945 WP_003826621.1 4625265..4625789(-) (ssb) [Citrobacter sp. TSA-1]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQSAPAAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=445239 HF677_RS21945 WP_003826621.1 4625265..4625789(-) (ssb) [Citrobacter sp. TSA-1]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAAATGAAAGAGCAGACTG
AATGGCACCGTGTGGTGCTGTTCGGCAAACTGGCGGAAGTTGCCAGCGAATATCTGCGTAAAGGTTCCCAGGTCTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGCGTAGAAAAGTACACCACTGAAGTTGTGGTTAACGTTGG
CGGCACCATGCAAATGCTGGGCGGTCGTCAGGGTGGTGGGGCTCCGGCAGGTGGCGGCCAGCAGCAGGGTGGTTGGGGTC
AGCCTCAGCAGCCGCAAGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCGGCTCCGGCAGCGCCG
TCTAATGAGCCGCCGATGGATTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B0T4S2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.889

100

0.764
  ssb Glaesserella parasuis strain SC1401

56.831

100

0.598
  ssb Neisseria meningitidis MC58

48.603

100

0.5
  ssb Neisseria gonorrhoeae MS11

48.603

100

0.5