Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AKL02_RS10150 Genome accession   NZ_CP053562
Coordinates   2126657..2127175 (-) Length   172 a.a.
NCBI ID   WP_078572308.1    Uniprot ID   -
Organism   Thioclava electrotropha strain Elox9     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2121657..2132175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AKL02_RS10115 (AKL02_010125) secF 2122207..2123193 (+) 987 WP_078520635.1 protein translocase subunit SecF -
  AKL02_RS10120 (AKL02_010130) - 2123177..2123566 (+) 390 WP_083079289.1 Mth938-like domain-containing protein -
  AKL02_RS10125 (AKL02_010135) ccmA 2123563..2124195 (+) 633 WP_083079290.1 heme ABC exporter ATP-binding protein CcmA -
  AKL02_RS10130 (AKL02_010140) ccmB 2124359..2125015 (+) 657 WP_078550436.1 heme exporter protein CcmB -
  AKL02_RS10135 (AKL02_010145) - 2125096..2125824 (+) 729 WP_083079291.1 heme ABC transporter permease -
  AKL02_RS10140 (AKL02_010150) ccmD 2125821..2126039 (+) 219 WP_083079292.1 heme exporter protein CcmD -
  AKL02_RS10145 (AKL02_010155) - 2126032..2126568 (+) 537 WP_108722430.1 DsbE family thiol:disulfide interchange protein -
  AKL02_RS10150 (AKL02_010160) ssb 2126657..2127175 (-) 519 WP_078572308.1 single-stranded DNA-binding protein Machinery gene
  AKL02_RS10155 (AKL02_010165) - 2127451..2127714 (+) 264 WP_158522159.1 PepSY domain-containing protein -
  AKL02_RS10160 (AKL02_010170) - 2127800..2128399 (+) 600 WP_083079293.1 cytochrome b/b6 domain-containing protein -
  AKL02_RS10165 (AKL02_010175) - 2128454..2128945 (+) 492 WP_232621768.1 helix-turn-helix transcriptional regulator -
  AKL02_RS10170 (AKL02_010180) - 2129062..2129685 (+) 624 WP_078520646.1 lytic transglycosylase domain-containing protein -
  AKL02_RS10175 (AKL02_010185) - 2129781..2130338 (-) 558 WP_078520647.1 YSC84-related protein -
  AKL02_RS10180 (AKL02_010190) hemB 2130480..2131481 (-) 1002 WP_083079294.1 porphobilinogen synthase -
  AKL02_RS10185 (AKL02_010195) - 2131638..2132171 (+) 534 WP_083079295.1 hypothetical protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 17970.53 Da        Isoelectric Point: 5.3190

>NTDB_id=445144 AKL02_RS10150 WP_078572308.1 2126657..2127175(-) (ssb) [Thioclava electrotropha strain Elox9]
MAGSVNKVILIGNLGRDPEVRTFSNGGKVCNLRIATSETWRDRNTGERKERTEWHSVAIFSEPLAKVAEQYLRKGSKVYI
EGQLETRKWQDQNGQDRYSTEVVLRPYRSELTMLDGPGGSGGGQGGGGGGYGGPSSGGGGYDDGGGYGGPSSGGSGGGGG
GGRSDFDDEIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=445144 AKL02_RS10150 WP_078572308.1 2126657..2127175(-) (ssb) [Thioclava electrotropha strain Elox9]
ATGGCAGGCAGCGTCAACAAGGTCATTCTGATCGGCAATCTGGGCCGAGACCCGGAGGTGCGGACCTTCTCGAACGGCGG
CAAGGTGTGCAACCTGCGCATCGCCACCTCCGAGACGTGGCGCGACCGCAATACCGGCGAGCGCAAGGAGCGCACCGAAT
GGCATTCGGTCGCGATCTTCTCGGAGCCGCTGGCGAAAGTCGCGGAGCAATATCTGCGCAAAGGTTCGAAAGTCTATATC
GAGGGCCAGCTCGAAACCCGCAAATGGCAGGACCAGAACGGTCAGGACCGCTACTCGACCGAGGTCGTGCTGCGCCCCTA
TCGCTCGGAACTGACCATGCTCGACGGGCCTGGCGGCTCGGGCGGCGGTCAAGGCGGCGGCGGCGGTGGCTACGGCGGCC
CGTCCTCGGGTGGCGGCGGCTACGATGATGGCGGCGGTTATGGCGGCCCGTCATCGGGCGGCTCCGGTGGCGGTGGCGGC
GGTGGCCGCTCGGATTTCGACGACGAGATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.667

100

0.541
  ssb Glaesserella parasuis strain SC1401

47.594

100

0.517
  ssb Neisseria meningitidis MC58

40.223

100

0.419
  ssb Neisseria gonorrhoeae MS11

40.223

100

0.419