Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   HOO69_RS08155 Genome accession   NZ_CP053541
Coordinates   1787609..1788196 (-) Length   195 a.a.
NCBI ID   WP_069666668.1    Uniprot ID   A0A178JFT0
Organism   Vibrio europaeus strain NPI-1     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1782609..1793196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HOO69_RS08135 (HOO69_08175) - 1782881..1784146 (-) 1266 WP_171801817.1 DUF945 family protein -
  HOO69_RS08140 (HOO69_08180) - 1784320..1786269 (+) 1950 WP_171801818.1 ATP-binding protein -
  HOO69_RS08145 (HOO69_08185) - 1786270..1786767 (+) 498 WP_171382498.1 response regulator -
  HOO69_RS08150 (HOO69_08190) - 1786934..1787500 (+) 567 WP_004749038.1 hypothetical protein -
  HOO69_RS08155 (HOO69_08195) tfoX 1787609..1788196 (-) 588 WP_069666668.1 TfoX/Sxy family DNA transformation protein Regulator
  HOO69_RS08160 (HOO69_08200) - 1788552..1789472 (+) 921 WP_069666669.1 HDOD domain-containing protein -
  HOO69_RS08165 (HOO69_08205) - 1789511..1790416 (+) 906 WP_171801819.1 lysine exporter LysO family protein -
  HOO69_RS08170 (HOO69_08210) - 1790533..1791045 (+) 513 WP_171801820.1 hypothetical protein -
  HOO69_RS08175 (HOO69_08215) panP 1791188..1792834 (+) 1647 WP_171382500.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22537.80 Da        Isoelectric Point: 9.3572

>NTDB_id=445051 HOO69_RS08155 WP_069666668.1 1787609..1788196(-) (tfoX) [Vibrio europaeus strain NPI-1]
MDMTEQQFIQYVQKFGDFQKRSMFGGTGLFRDEAMFALISTDKIFIRGGEALDETLNQLGCEKYRHVKKQTTATVNYYDI
TQLFSSQHQRLSELVEQSINFSVSQREFKRSSANRRLRDLPNMQLTLERMVKKAGVEDVDTFLELGAPAVFSRVKQAYGS
DVDVKLLWKFAGAIEGIHWKLIQEPRKRQLLASCH

Nucleotide


Download         Length: 588 bp        

>NTDB_id=445051 HOO69_RS08155 WP_069666668.1 1787609..1788196(-) (tfoX) [Vibrio europaeus strain NPI-1]
ATGGATATGACAGAGCAACAATTTATTCAATACGTACAAAAGTTTGGCGACTTTCAAAAACGATCTATGTTTGGTGGTAC
TGGGTTGTTTAGAGACGAGGCAATGTTTGCACTAATCAGTACAGACAAAATATTCATCAGAGGTGGAGAAGCATTAGATG
AAACGCTTAACCAGCTAGGTTGTGAGAAATACCGTCATGTTAAAAAACAGACCACAGCGACGGTAAATTATTACGATATA
ACCCAGCTTTTTTCGAGCCAACATCAACGACTAAGTGAGCTAGTAGAACAATCTATAAATTTTTCCGTATCGCAGCGTGA
GTTTAAGCGTTCATCGGCGAACCGACGCTTGCGTGATCTGCCTAATATGCAACTGACCTTAGAACGTATGGTGAAAAAGG
CAGGGGTAGAGGATGTTGATACCTTTTTAGAACTTGGCGCTCCAGCGGTCTTTTCACGAGTCAAACAAGCGTATGGCAGT
GATGTGGATGTAAAGCTGCTGTGGAAATTTGCTGGTGCAATCGAAGGTATTCATTGGAAACTGATTCAAGAGCCACGTAA
GCGTCAACTATTGGCGAGTTGCCACTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(11-100)

TfoX C-terminal domain (TfoX_C)

(114-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A178JFT0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

74.479

98.462

0.733
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

74.479

98.462

0.733
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

74.479

98.462

0.733
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

74.479

98.462

0.733
  tfoX Vibrio cholerae strain A1552

74.479

98.462

0.733
  tfoX Vibrio campbellii strain DS40M4

69.744

100

0.697
  tfoX Vibrio parahaemolyticus RIMD 2210633

66.667

100

0.667
  tfoX Aliivibrio fischeri ES114

57.592

97.949

0.564