Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   HOO69_RS05185 Genome accession   NZ_CP053541
Coordinates   1146682..1148106 (-) Length   474 a.a.
NCBI ID   WP_171801470.1    Uniprot ID   -
Organism   Vibrio europaeus strain NPI-1     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1141682..1153106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HOO69_RS05165 (HOO69_05180) - 1143110..1144315 (+) 1206 WP_171801469.1 HD-GYP domain-containing protein -
  HOO69_RS05170 (HOO69_05185) cdd 1144363..1145250 (-) 888 WP_069667244.1 cytidine deaminase -
  HOO69_RS05175 (HOO69_05190) - 1145494..1146171 (-) 678 WP_069666186.1 CidB/LrgB family autolysis modulator -
  HOO69_RS05180 (HOO69_05195) - 1146171..1146536 (-) 366 WP_069666187.1 CidA/LrgA family protein -
  HOO69_RS05185 (HOO69_05200) sbcB 1146682..1148106 (-) 1425 WP_171801470.1 exodeoxyribonuclease I Machinery gene
  HOO69_RS05190 (HOO69_05205) - 1148603..1148848 (+) 246 WP_171801471.1 hypothetical protein -
  HOO69_RS05195 (HOO69_05210) - 1148935..1149609 (+) 675 WP_171801472.1 hypothetical protein -
  HOO69_RS05200 (HOO69_05215) - 1149853..1150404 (+) 552 WP_171801473.1 VRR-NUC domain-containing protein -
  HOO69_RS05205 (HOO69_05220) - 1150526..1150894 (+) 369 WP_171801474.1 hypothetical protein -
  HOO69_RS05210 (HOO69_05225) - 1150948..1151253 (-) 306 WP_171801475.1 type II toxin-antitoxin system RelE/ParE family toxin -
  HOO69_RS05215 (HOO69_05230) - 1151262..1151504 (-) 243 WP_171801476.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  HOO69_RS05220 (HOO69_05235) - 1151641..1153014 (-) 1374 WP_171801477.1 L-cystine transporter -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54725.12 Da        Isoelectric Point: 4.9019

>NTDB_id=445049 HOO69_RS05185 WP_171801470.1 1146682..1148106(-) (sbcB) [Vibrio europaeus strain NPI-1]
MQQEHQPTFFFFDYETWGTSPAKDRPCQFAGVRTDMDFNIIGEPLVIYCQPPADYLPAPEAALITGITPQTAENQGLSEP
EFIAKIHEQLATPNTISLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACYALRPEGVNWPENDEGFI
SFKLEHLSVTNGIEHENAHDAMADVIATIEMAKKVKAAQPKLFDYFLSMRHKRKLNELIDIVNMTPLMHVSGMLGKECNY
TSWIVPVAWHPTNQNAIICVDLAKDPQALLDLDTEQLNERLYTKRSELAPDELPVPVKLIHLNKCPILAPAKTLTAENAE
KIGIDREKCLENLALLRKHPEIREKLIGVYGIEREYEKSNDVDSMLYDGFFSPADKAAMNIIRETDPNNLSALDISFSDD
RIAPLLFRYRARHFPWTLDESEQQRWATHCRDYFESRIEDYMLNLENLVHEHESDQKKIAILKSIYQYVQKRVS

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=445049 HOO69_RS05185 WP_171801470.1 1146682..1148106(-) (sbcB) [Vibrio europaeus strain NPI-1]
ATGCAGCAAGAGCATCAGCCTACGTTTTTCTTTTTTGATTACGAGACGTGGGGAACTAGCCCAGCGAAAGATCGACCGTG
TCAGTTTGCGGGTGTTCGTACCGATATGGACTTCAACATAATTGGTGAGCCTCTTGTTATTTATTGCCAACCGCCTGCGG
ATTATCTTCCGGCACCGGAAGCCGCGCTAATTACAGGTATTACTCCGCAAACTGCGGAAAACCAAGGTCTTTCAGAACCC
GAGTTTATCGCTAAGATCCACGAACAACTGGCAACACCAAACACCATTAGCTTGGGCTACAACAGTATCCGATTCGATGA
TGAGGTAACGCGCTACACCTGTTACAGAAACTTTATCGATCCTTATGCGTGGAGTTGGCAAAACGGTAACTCCCGTTGGG
ATTTGCTTGATGTTATGCGTGCTTGCTACGCGCTTCGTCCAGAAGGGGTAAACTGGCCTGAGAACGATGAAGGTTTTATC
AGCTTTAAGCTTGAGCATTTATCTGTTACCAATGGCATTGAACATGAGAACGCACACGATGCTATGGCGGATGTTATCGC
GACGATTGAAATGGCTAAAAAGGTGAAAGCGGCTCAACCAAAACTGTTTGATTACTTCCTAAGCATGCGTCACAAGCGCA
AGTTGAACGAGCTGATCGACATCGTAAACATGACACCCTTGATGCATGTTTCAGGAATGTTAGGCAAAGAGTGTAACTAC
ACCAGTTGGATTGTTCCTGTTGCTTGGCACCCGACTAATCAGAATGCGATCATTTGTGTCGATTTGGCGAAAGACCCGCA
AGCCCTATTGGATTTGGATACCGAGCAGCTTAATGAGCGACTGTATACTAAGCGTTCTGAGCTTGCACCTGACGAGCTTC
CCGTCCCTGTTAAGCTTATCCATCTCAATAAGTGCCCTATTCTCGCTCCGGCGAAAACACTTACTGCTGAAAACGCAGAG
AAGATTGGCATTGACCGAGAGAAATGTTTGGAGAACTTAGCTCTGCTCCGCAAGCACCCTGAAATTCGTGAAAAGCTGAT
TGGTGTTTATGGCATTGAGCGGGAATATGAAAAGAGCAATGACGTCGATAGCATGCTCTATGATGGGTTCTTCTCTCCGG
CAGATAAAGCAGCGATGAACATCATTCGTGAAACTGACCCTAACAACCTATCCGCGCTTGATATTTCATTTAGTGATGAC
CGTATTGCTCCACTGCTGTTCCGCTATCGTGCACGACACTTCCCATGGACGCTCGATGAGTCAGAACAACAACGATGGGC
AACGCACTGTCGTGACTACTTCGAAAGTCGTATTGAAGACTACATGCTAAATTTGGAAAACTTAGTTCACGAACATGAAA
GTGACCAAAAGAAAATCGCTATTTTAAAATCTATCTACCAATACGTACAAAAGCGAGTATCCTAG

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.406

99.367

0.789